miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 51970 0.74 0.617305
Target:  5'- gGCGUGucCAgCGAGGcGAGCaGCUCCGCGg -3'
miRNA:   3'- -CGCACcuGU-GCUUC-UUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 133423 0.74 0.636938
Target:  5'- cCGcGGACGCGggGGucuuggcggccgaGGCGCUCUugGc -3'
miRNA:   3'- cGCaCCUGUGCuuCU-------------UCGCGAGGugC- -5'
29381 3' -53.9 NC_006151.1 + 88910 0.74 0.637971
Target:  5'- gGCGUcGGGCGaGcGGAAGCGC-CCGCGg -3'
miRNA:   3'- -CGCA-CCUGUgCuUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 57929 0.74 0.637971
Target:  5'- gGCGUGGaagGCGCgGAAGccGAGCGCgggCCACa -3'
miRNA:   3'- -CGCACC---UGUG-CUUC--UUCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 106351 0.74 0.637971
Target:  5'- cGCgGUGGACACGcuGGAcgcgGGCGCgcgcccgCCGCGg -3'
miRNA:   3'- -CG-CACCUGUGCu-UCU----UCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 98000 0.73 0.648301
Target:  5'- gGCGUGGcCGCGuAGGcGGCGCcggccaggUCCGCGg -3'
miRNA:   3'- -CGCACCuGUGC-UUCuUCGCG--------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 127807 0.73 0.668914
Target:  5'- cGCGgGGGCGCGAGGuccuuGCGgUUCACGu -3'
miRNA:   3'- -CGCaCCUGUGCUUCuu---CGCgAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 100441 0.73 0.679179
Target:  5'- gGCGUGauGGCGCaGAcgacGGAGGCGCUgCGCGa -3'
miRNA:   3'- -CGCAC--CUGUG-CU----UCUUCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 68768 0.73 0.679179
Target:  5'- gGCgGUGGcgcGCGCGgcGAGGUGCgccgCCGCGg -3'
miRNA:   3'- -CG-CACC---UGUGCuuCUUCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 128367 0.72 0.708692
Target:  5'- cGCGUGGugguGCACGAAGGucacgagguccacGGCGg-CCACGa -3'
miRNA:   3'- -CGCACC----UGUGCUUCU-------------UCGCgaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 88310 0.72 0.709701
Target:  5'- gGCGcaGGGCcuCGGAGAAGCGCUgcgaggCCACGc -3'
miRNA:   3'- -CGCa-CCUGu-GCUUCUUCGCGA------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 39702 0.72 0.719753
Target:  5'- cCGUGGACGgcUGcAAGGacauggcccgccAGCGCUCCGCGc -3'
miRNA:   3'- cGCACCUGU--GC-UUCU------------UCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 111760 0.72 0.719753
Target:  5'- aCGUGGGCccagcuGCGAuGAGGCGCagCACGu -3'
miRNA:   3'- cGCACCUG------UGCUuCUUCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 55198 0.72 0.728735
Target:  5'- aGCGUGGACACGucGcAGCcggGCUucgggcaCCACGg -3'
miRNA:   3'- -CGCACCUGUGCuuCuUCG---CGA-------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 655 0.72 0.729729
Target:  5'- cCG-GGGCGCGGccgGGgcGgGCUCCGCGg -3'
miRNA:   3'- cGCaCCUGUGCU---UCuuCgCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 41493 0.72 0.729729
Target:  5'- cGCGUGG-CGCGAGGGgagccaauGGgGCgggcgCCGCGg -3'
miRNA:   3'- -CGCACCuGUGCUUCU--------UCgCGa----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 65170 0.71 0.749412
Target:  5'- uGCG-GcGCGCGAggcGGAAGCGCgggUCCGCGa -3'
miRNA:   3'- -CGCaCcUGUGCU---UCUUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 53316 0.71 0.759101
Target:  5'- uGCGUGGGCgagcccacacagACGAGcacGggGCGCgcgcgcgCCGCGu -3'
miRNA:   3'- -CGCACCUG------------UGCUU---CuuCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 118574 0.71 0.759101
Target:  5'- ---cGGGCACGAGGcguGGCGCgugCCGCu -3'
miRNA:   3'- cgcaCCUGUGCUUCu--UCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 7055 0.71 0.759101
Target:  5'- --aUGGGCGCGcGGAGGCGuCUcCCGCGc -3'
miRNA:   3'- cgcACCUGUGCuUCUUCGC-GA-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.