miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 132520 1.12 0.002941
Target:  5'- aGCGUGGACACGAAGAAGCGCUCCACGg -3'
miRNA:   3'- -CGCACCUGUGCUUCUUCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 86634 0.82 0.243485
Target:  5'- cGCGUGuGGCacaugaGCGAGGAGGCGCUCaCGCGc -3'
miRNA:   3'- -CGCAC-CUG------UGCUUCUUCGCGAG-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 53493 0.81 0.294856
Target:  5'- cCGUGGcACGCGAAGGccaGGUGCUCCGCc -3'
miRNA:   3'- cGCACC-UGUGCUUCU---UCGCGAGGUGc -5'
29381 3' -53.9 NC_006151.1 + 70092 0.79 0.361475
Target:  5'- cGCGUGGGCgGCGAAG-GGCGCgagcgggUCCACGc -3'
miRNA:   3'- -CGCACCUG-UGCUUCuUCGCG-------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 28107 0.79 0.38198
Target:  5'- aGCG-GGGCGCGGcuccucgucggcucgGGgcGCGCUCCGCGc -3'
miRNA:   3'- -CGCaCCUGUGCU---------------UCuuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 110867 0.78 0.404112
Target:  5'- cGC-UGGugGCGAacauGGGcuGGCGCUCCACGa -3'
miRNA:   3'- -CGcACCugUGCU----UCU--UCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 31721 0.78 0.404112
Target:  5'- gGCGgaacgGGGCGUGGAGAGGCGC-CCGCGc -3'
miRNA:   3'- -CGCa----CCUGUGCUUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 75430 0.77 0.439695
Target:  5'- gGCGUGGGCGCGAAGcugccGGCGUggCGCGc -3'
miRNA:   3'- -CGCACCUGUGCUUCu----UCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 20982 0.77 0.439695
Target:  5'- cGCGUcgccGGGCACGAGGAcGGCGCUgCCgGCGa -3'
miRNA:   3'- -CGCA----CCUGUGCUUCU-UCGCGA-GG-UGC- -5'
29381 3' -53.9 NC_006151.1 + 60474 0.77 0.448867
Target:  5'- gGCGUGaagcGCGCGcAGAAGCGCgCCACGa -3'
miRNA:   3'- -CGCACc---UGUGCuUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 122045 0.76 0.476998
Target:  5'- cGCGUGGAgACGGAGcuGCaguucCUCCACGa -3'
miRNA:   3'- -CGCACCUgUGCUUCuuCGc----GAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 102682 0.76 0.515801
Target:  5'- cCGUGGACGCGggGGcgcccGGCGCgggCgGCGc -3'
miRNA:   3'- cGCACCUGUGCuuCU-----UCGCGa--GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 135008 0.75 0.535678
Target:  5'- gGCGgGGGCGCGggGggGCagcaGCggggCCGCGu -3'
miRNA:   3'- -CGCaCCUGUGCuuCuuCG----CGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 138139 0.75 0.544711
Target:  5'- cCGUGGACGCGGAGGAccggcgcGCGCUCgAgGc -3'
miRNA:   3'- cGCACCUGUGCUUCUU-------CGCGAGgUgC- -5'
29381 3' -53.9 NC_006151.1 + 81522 0.75 0.555816
Target:  5'- cGCGUgagcucggcGGcCGCGgcGgcGCGCUCCGCGg -3'
miRNA:   3'- -CGCA---------CCuGUGCuuCuuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 81228 0.75 0.555816
Target:  5'- cGCGUGaACACGAAGcuGGCGCccCCGCGc -3'
miRNA:   3'- -CGCACcUGUGCUUCu-UCGCGa-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 83221 0.74 0.58641
Target:  5'- cGCGUGGuCugGucGAAGCGCggCGCGc -3'
miRNA:   3'- -CGCACCuGugCuuCUUCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82118 0.74 0.596684
Target:  5'- aGCGUGuACACGuGGAAGCGgC-CCGCGg -3'
miRNA:   3'- -CGCACcUGUGCuUCUUCGC-GaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 122505 0.74 0.596684
Target:  5'- cGCGccGGCGCGcGGAcGCGCUCCugGa -3'
miRNA:   3'- -CGCacCUGUGCuUCUuCGCGAGGugC- -5'
29381 3' -53.9 NC_006151.1 + 104903 0.74 0.596684
Target:  5'- -gGUGGACGCGgcGGcGGCGCgcgaCCGCGa -3'
miRNA:   3'- cgCACCUGUGCuuCU-UCGCGa---GGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.