miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 655 0.72 0.729729
Target:  5'- cCG-GGGCGCGGccgGGgcGgGCUCCGCGg -3'
miRNA:   3'- cGCaCCUGUGCU---UCuuCgCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 2008 0.71 0.796618
Target:  5'- ---cGGGC-CGAGGggGCGCcCCGCu -3'
miRNA:   3'- cgcaCCUGuGCUUCuuCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 2485 0.66 0.959836
Target:  5'- cGCGcGGuGCcCGAAGGcGGCGC-CCGCGu -3'
miRNA:   3'- -CGCaCC-UGuGCUUCU-UCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 3931 0.66 0.952124
Target:  5'- aGCGgGGGCAgGccGGgcGCggGCUCCGCGg -3'
miRNA:   3'- -CGCaCCUGUgCu-UCuuCG--CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 4217 0.66 0.959836
Target:  5'- gGCGgccgGGGCGCGGGcGGGCGCgggcagCCggaGCGg -3'
miRNA:   3'- -CGCa---CCUGUGCUUcUUCGCGa-----GG---UGC- -5'
29381 3' -53.9 NC_006151.1 + 4315 0.68 0.911734
Target:  5'- cGCG-GGGCACGcGGccGgGCUgCGCGg -3'
miRNA:   3'- -CGCaCCUGUGCuUCuuCgCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 5053 0.66 0.956095
Target:  5'- gGCGgaggaGGAgGCGGAGGAGgccgagggcCGCggggCCGCGg -3'
miRNA:   3'- -CGCa----CCUgUGCUUCUUC---------GCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 7055 0.71 0.759101
Target:  5'- --aUGGGCGCGcGGAGGCGuCUcCCGCGc -3'
miRNA:   3'- cgcACCUGUGCuUCUUCGC-GA-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 7159 0.67 0.943476
Target:  5'- cGCGcGGGCGCGAGGc-GCauGCUCgGCa -3'
miRNA:   3'- -CGCaCCUGUGCUUCuuCG--CGAGgUGc -5'
29381 3' -53.9 NC_006151.1 + 10101 0.66 0.956095
Target:  5'- gGCG-GGuGCGgagGAGGAAGCGCUCgCGCc -3'
miRNA:   3'- -CGCaCC-UGUg--CUUCUUCGCGAG-GUGc -5'
29381 3' -53.9 NC_006151.1 + 10224 0.69 0.871375
Target:  5'- gGCGgcugcGGACGCGGAGggGgGCgaggggaCACa -3'
miRNA:   3'- -CGCa----CCUGUGCUUCuuCgCGag-----GUGc -5'
29381 3' -53.9 NC_006151.1 + 10909 0.68 0.917633
Target:  5'- gGCGcGGAC-CGggGucGgGC-CCACGg -3'
miRNA:   3'- -CGCaCCUGuGCuuCuuCgCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 17273 0.66 0.966647
Target:  5'- cGCGgGGGCGggcUGAuacGGAGGgGCUCCcCGg -3'
miRNA:   3'- -CGCaCCUGU---GCU---UCUUCgCGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 17373 0.67 0.945282
Target:  5'- cCGUGGggucggaccguguccGCACGAcGggGCGCguggCgCGCGg -3'
miRNA:   3'- cGCACC---------------UGUGCUuCuuCGCGa---G-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 19258 0.69 0.856123
Target:  5'- cGCGUGGAaGCGggGcucguGGCGCgcggggcCCACc -3'
miRNA:   3'- -CGCACCUgUGCuuCu----UCGCGa------GGUGc -5'
29381 3' -53.9 NC_006151.1 + 20122 0.71 0.796618
Target:  5'- gGCGacgGGGCugGggGgcGgGCgCCGCGg -3'
miRNA:   3'- -CGCa--CCUGugCuuCuuCgCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 20525 0.66 0.959836
Target:  5'- gGCGUGGugaACACGgcGuccucGGCGgggUCCACGa -3'
miRNA:   3'- -CGCACC---UGUGCuuCu----UCGCg--AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 20883 0.69 0.848184
Target:  5'- cGCGcuUGGGguCGAGGcgcAGCaGCUCCACGc -3'
miRNA:   3'- -CGC--ACCUguGCUUCu--UCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 20982 0.77 0.439695
Target:  5'- cGCGUcgccGGGCACGAGGAcGGCGCUgCCgGCGa -3'
miRNA:   3'- -CGCA----CCUGUGCUUCU-UCGCGA-GG-UGC- -5'
29381 3' -53.9 NC_006151.1 + 22825 0.68 0.911734
Target:  5'- uGCaggGGGCGCGAGGcGAGCGCgcugcCCAgGa -3'
miRNA:   3'- -CGca-CCUGUGCUUC-UUCGCGa----GGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.