miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 142107 0.66 0.966647
Target:  5'- uGCGcGGGCugGguGAAGCcCaCCGCGa -3'
miRNA:   3'- -CGCaCCUGugCuuCUUCGcGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 141742 0.68 0.899216
Target:  5'- gGCGgagGGGCGCGggGc-GCGCgCCcCGg -3'
miRNA:   3'- -CGCa--CCUGUGCuuCuuCGCGaGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 139641 0.66 0.963352
Target:  5'- gGCGccGGCGCGggGGucgcggcgGGCGCgCCGCc -3'
miRNA:   3'- -CGCacCUGUGCuuCU--------UCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 139540 0.68 0.911734
Target:  5'- gGCGUccaggucgGGGaGCGAGGAgcGGCGCccggUCCGCGa -3'
miRNA:   3'- -CGCA--------CCUgUGCUUCU--UCGCG----AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 138696 0.66 0.959836
Target:  5'- ---cGGACGCGcuGAgcccGGCGCUgCGCGc -3'
miRNA:   3'- cgcaCCUGUGCuuCU----UCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 138139 0.75 0.544711
Target:  5'- cCGUGGACGCGGAGGAccggcgcGCGCUCgAgGc -3'
miRNA:   3'- cGCACCUGUGCUUCUU-------CGCGAGgUgC- -5'
29381 3' -53.9 NC_006151.1 + 135008 0.75 0.535678
Target:  5'- gGCGgGGGCGCGggGggGCagcaGCggggCCGCGu -3'
miRNA:   3'- -CGCaCCUGUGCuuCuuCG----CGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 133985 0.66 0.947919
Target:  5'- -gGUGGAgACGAuggaAGAgAGCGCgggggCCACc -3'
miRNA:   3'- cgCACCUgUGCU----UCU-UCGCGa----GGUGc -5'
29381 3' -53.9 NC_006151.1 + 133423 0.74 0.636938
Target:  5'- cCGcGGACGCGggGGucuuggcggccgaGGCGCUCUugGc -3'
miRNA:   3'- cGCaCCUGUGCuuCU-------------UCGCGAGGugC- -5'
29381 3' -53.9 NC_006151.1 + 132520 1.12 0.002941
Target:  5'- aGCGUGGACACGAAGAAGCGCUCCACGg -3'
miRNA:   3'- -CGCACCUGUGCUUCUUCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 130731 0.66 0.959836
Target:  5'- cGCGcGGcCGCGgcGcAGCGCcacCCACGa -3'
miRNA:   3'- -CGCaCCuGUGCuuCuUCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 130384 0.67 0.943476
Target:  5'- gGCGUccaGCGCGAAGGccAGCGCcucgcCCGCGa -3'
miRNA:   3'- -CGCAcc-UGUGCUUCU--UCGCGa----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 130076 0.69 0.878676
Target:  5'- aGCGUgaacauGGGCGCGAgcAGcucGCGCUCCuCGg -3'
miRNA:   3'- -CGCA------CCUGUGCU--UCuu-CGCGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 129796 0.69 0.863856
Target:  5'- gGCGUGGgcccGCAUGAGGcccguGAGCGCggagCgCGCGg -3'
miRNA:   3'- -CGCACC----UGUGCUUC-----UUCGCGa---G-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 128367 0.72 0.708692
Target:  5'- cGCGUGGugguGCACGAAGGucacgagguccacGGCGg-CCACGa -3'
miRNA:   3'- -CGCACC----UGUGCUUCU-------------UCGCgaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 128070 0.66 0.959836
Target:  5'- cGCGgGGGCGacCGAcaGGAAGCGCaugucCCGCu -3'
miRNA:   3'- -CGCaCCUGU--GCU--UCUUCGCGa----GGUGc -5'
29381 3' -53.9 NC_006151.1 + 127807 0.73 0.668914
Target:  5'- cGCGgGGGCGCGAGGuccuuGCGgUUCACGu -3'
miRNA:   3'- -CGCaCCUGUGCUUCuu---CGCgAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 127372 0.66 0.959836
Target:  5'- gGCGgGGAcCGCGggGGuGGCGggggCCGCGg -3'
miRNA:   3'- -CGCaCCU-GUGCuuCU-UCGCga--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 124055 0.69 0.856123
Target:  5'- gGCGaccUGGACGCGcGGAcggccguGCGCgcggCCGCGa -3'
miRNA:   3'- -CGC---ACCUGUGCuUCUu------CGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 123036 0.67 0.938793
Target:  5'- gGCGUGGGCGgaccUGccGGccgcGGCGCUgCGCGa -3'
miRNA:   3'- -CGCACCUGU----GCuuCU----UCGCGAgGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.