miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 46085 0.67 0.938793
Target:  5'- gGgGUGaaGACuauacCGAGGAGGUGCgCCACGa -3'
miRNA:   3'- -CgCAC--CUGu----GCUUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 51165 0.67 0.923288
Target:  5'- cGCGgugaUGGugACGugcAGGGccCGCUCCACGa -3'
miRNA:   3'- -CGC----ACCugUGC---UUCUucGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 51970 0.74 0.617305
Target:  5'- gGCGUGucCAgCGAGGcGAGCaGCUCCGCGg -3'
miRNA:   3'- -CGCACcuGU-GCUUC-UUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 52374 0.66 0.966647
Target:  5'- cGCGcccccgGGGCccGCGggGGcggcgGGCGCcgCCGCGc -3'
miRNA:   3'- -CGCa-----CCUG--UGCuuCU-----UCGCGa-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 52602 0.7 0.831714
Target:  5'- cGCGUGGACgaagGCGucGucGCGCaggacggCCGCGa -3'
miRNA:   3'- -CGCACCUG----UGCuuCuuCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 53316 0.71 0.759101
Target:  5'- uGCGUGGGCgagcccacacagACGAGcacGggGCGCgcgcgcgCCGCGu -3'
miRNA:   3'- -CGCACCUG------------UGCUU---CuuCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 53493 0.81 0.294856
Target:  5'- cCGUGGcACGCGAAGGccaGGUGCUCCGCc -3'
miRNA:   3'- cGCACC-UGUGCUUCU---UCGCGAGGUGc -5'
29381 3' -53.9 NC_006151.1 + 53986 0.71 0.778126
Target:  5'- cGCG-GGcguCGCGGcgagcucccGGAcGCGCUCCACGa -3'
miRNA:   3'- -CGCaCCu--GUGCU---------UCUuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 54919 0.68 0.911734
Target:  5'- cGCGUGcACgGCGAGGugcuGGCGUgCCACGc -3'
miRNA:   3'- -CGCACcUG-UGCUUCu---UCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 55198 0.72 0.728735
Target:  5'- aGCGUGGACACGucGcAGCcggGCUucgggcaCCACGg -3'
miRNA:   3'- -CGCACCUGUGCuuCuUCG---CGA-------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 55889 0.68 0.917633
Target:  5'- cGCGgcGGACgugcgccggGCGAccGAGCgGCUCCGCGa -3'
miRNA:   3'- -CGCa-CCUG---------UGCUucUUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 56237 0.66 0.947919
Target:  5'- cCGaGGACccgACGGAGuucGCGCUCUGCGu -3'
miRNA:   3'- cGCaCCUG---UGCUUCuu-CGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 56989 0.7 0.831714
Target:  5'- aCGaGGGCgGCGAAGAuGgGCUCCAUGu -3'
miRNA:   3'- cGCaCCUG-UGCUUCUuCgCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 57196 0.67 0.943476
Target:  5'- uCGUGG-CGCGAGGcgaAGGCccGCUCgACGa -3'
miRNA:   3'- cGCACCuGUGCUUC---UUCG--CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 57836 0.7 0.814503
Target:  5'- cGCGgaGGGCGCac--GGGUGCUCCACGg -3'
miRNA:   3'- -CGCa-CCUGUGcuucUUCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 57929 0.74 0.637971
Target:  5'- gGCGUGGaagGCGCgGAAGccGAGCGCgggCCACa -3'
miRNA:   3'- -CGCACC---UGUG-CUUC--UUCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 58448 0.69 0.848184
Target:  5'- gGCGUGcGcgcGCGCGgcGucGCGgUCCACGa -3'
miRNA:   3'- -CGCAC-C---UGUGCuuCuuCGCgAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 58797 0.66 0.956095
Target:  5'- aCGUGGAC-----GAAGCGCgCCGCGu -3'
miRNA:   3'- cGCACCUGugcuuCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 60474 0.77 0.448867
Target:  5'- gGCGUGaagcGCGCGcAGAAGCGCgCCACGa -3'
miRNA:   3'- -CGCACc---UGUGCuUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 62505 0.67 0.935867
Target:  5'- gGCGcGGACgACGGcccggcgguaccugcAGAAGCGcCUgCACGg -3'
miRNA:   3'- -CGCaCCUG-UGCU---------------UCUUCGC-GAgGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.