miRNA display CGI


Results 81 - 100 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 100765 0.68 0.521013
Target:  5'- cUGCGCGaGGCcGCggaCCgCgUCCugGGCg -3'
miRNA:   3'- -AUGCGC-CCGuCGa--GGaGgAGGugCCG- -5'
29381 5' -61.8 NC_006151.1 + 101459 0.68 0.521013
Target:  5'- -cCGUGGGCcugGGcCUCUaCCgCCGCGGCg -3'
miRNA:   3'- auGCGCCCG---UC-GAGGaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 140145 0.68 0.521013
Target:  5'- cACGUGGGUcaAGCUCaUCCUCaccaaGgGGCu -3'
miRNA:   3'- aUGCGCCCG--UCGAGgAGGAGg----UgCCG- -5'
29381 5' -61.8 NC_006151.1 + 65841 0.68 0.51151
Target:  5'- aGCGCGGccCGGCUcacgCCUCCUCCGCu-- -3'
miRNA:   3'- aUGCGCCc-GUCGA----GGAGGAGGUGccg -5'
29381 5' -61.8 NC_006151.1 + 36039 0.68 0.51151
Target:  5'- gGCGCc-GCGGCUCCUCCggcgaggaucUCCucuuCGGCc -3'
miRNA:   3'- aUGCGccCGUCGAGGAGG----------AGGu---GCCG- -5'
29381 5' -61.8 NC_006151.1 + 130711 0.68 0.51151
Target:  5'- gACG-GGGCGGC-CCgggggCCcgcgcggCCGCGGCg -3'
miRNA:   3'- aUGCgCCCGUCGaGGa----GGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 26327 0.68 0.51151
Target:  5'- aGCGCGGGgcgaGGC-CCgCCUCacgggGCGGCg -3'
miRNA:   3'- aUGCGCCCg---UCGaGGaGGAGg----UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 4170 0.68 0.51151
Target:  5'- aGCGCGaGCAGCgcggCCgucaCCUCCucgaGGCa -3'
miRNA:   3'- aUGCGCcCGUCGa---GGa---GGAGGug--CCG- -5'
29381 5' -61.8 NC_006151.1 + 3371 0.68 0.50302
Target:  5'- cGgGCGGGCAGUaggcggcgagggccgCCUCggagggCCGCGGCg -3'
miRNA:   3'- aUgCGCCCGUCGa--------------GGAGga----GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 133163 0.68 0.50208
Target:  5'- gGCGCGGGCGuGggCCUCggCCACGcGUc -3'
miRNA:   3'- aUGCGCCCGU-CgaGGAGgaGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 123765 0.68 0.50208
Target:  5'- gGCGCGGGCcccgggggcaucGGC-CCgggCa-CCACGGCg -3'
miRNA:   3'- aUGCGCCCG------------UCGaGGa--GgaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 32150 0.68 0.50208
Target:  5'- gGCGCGaGCGcUUCCUCCUCCGCa-- -3'
miRNA:   3'- aUGCGCcCGUcGAGGAGGAGGUGccg -5'
29381 5' -61.8 NC_006151.1 + 6149 0.68 0.50208
Target:  5'- -cCGCGaGGaCGGCggCCUcggCCUCgGCGGCg -3'
miRNA:   3'- auGCGC-CC-GUCGa-GGA---GGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 13709 0.68 0.50208
Target:  5'- gACGCGGGCacGGCUCCcCCauuggccggUCC-CGGa -3'
miRNA:   3'- aUGCGCCCG--UCGAGGaGG---------AGGuGCCg -5'
29381 5' -61.8 NC_006151.1 + 79095 0.68 0.500203
Target:  5'- cGCGCGaGCgAGCgccCCUCCgucguggcugggCCACGGCc -3'
miRNA:   3'- aUGCGCcCG-UCGa--GGAGGa-----------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57951 0.68 0.492726
Target:  5'- aGCGCGGGCcacAGC-CCgUCCgugagCCgguggGCGGCg -3'
miRNA:   3'- aUGCGCCCG---UCGaGG-AGGa----GG-----UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 85414 0.68 0.492726
Target:  5'- gGCGCGGGCuucguggacgAGgUCaaCCgcgCCGCGGCc -3'
miRNA:   3'- aUGCGCCCG----------UCgAGgaGGa--GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 108159 0.68 0.492726
Target:  5'- -cCGCGGGguGCUCC-CC-CCGCcccGCc -3'
miRNA:   3'- auGCGCCCguCGAGGaGGaGGUGc--CG- -5'
29381 5' -61.8 NC_006151.1 + 116386 0.68 0.492726
Target:  5'- uUGCGCucGCcgAGCgCCUCCUcggCCACGGCg -3'
miRNA:   3'- -AUGCGccCG--UCGaGGAGGA---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 141663 0.68 0.492726
Target:  5'- -cCGCGGGCucguuguggaGGCaugUCUgCCUCCcACGGCg -3'
miRNA:   3'- auGCGCCCG----------UCGa--GGA-GGAGG-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.