miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 106204 0.67 0.550884
Target:  5'- --gGCGGuGCGGCUcgcCCUCCccgaccugaugguggCCGCGGUg -3'
miRNA:   3'- augCGCC-CGUCGA---GGAGGa--------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 51067 0.67 0.549911
Target:  5'- -gUGauGGCGGCggCCUCCUCCGCucGCc -3'
miRNA:   3'- auGCgcCCGUCGa-GGAGGAGGUGc-CG- -5'
29381 5' -61.8 NC_006151.1 + 112810 0.67 0.549911
Target:  5'- cGCGCGucgcuGCAGCgcgCCUUCgCCACGcGCg -3'
miRNA:   3'- aUGCGCc----CGUCGa--GGAGGaGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 118434 0.67 0.549911
Target:  5'- gGCGCGGaggugugcgcGCGGCUCggCCUggCCGCGGa -3'
miRNA:   3'- aUGCGCC----------CGUCGAGgaGGA--GGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 18181 0.67 0.549911
Target:  5'- aAUGCGGGCGGg-CCggUUCUCC-CGGUa -3'
miRNA:   3'- aUGCGCCCGUCgaGG--AGGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 136671 0.67 0.549911
Target:  5'- aGCGCGcGGCcGCcgccuUCUUCCgCCACGuGCg -3'
miRNA:   3'- aUGCGC-CCGuCG-----AGGAGGaGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 130133 0.67 0.546028
Target:  5'- -cCGUGGGCGcGCgccagcagguacaCCUCUgCCACGGCc -3'
miRNA:   3'- auGCGCCCGU-CGa------------GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 11356 0.67 0.541186
Target:  5'- -cCGCGGGCGcuaccgcgcgcuccGCUcgccgccucuuccccCCUCCUCCGCcGCc -3'
miRNA:   3'- auGCGCCCGU--------------CGA---------------GGAGGAGGUGcCG- -5'
29381 5' -61.8 NC_006151.1 + 23094 0.67 0.540219
Target:  5'- -uCGCuggaGGuCAGCUCCucgUCCUCCuCGGCc -3'
miRNA:   3'- auGCGc---CC-GUCGAGG---AGGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 22289 0.67 0.540219
Target:  5'- gGCGCGGGCacGGCgUCCaCgUCCGCGccgaGCg -3'
miRNA:   3'- aUGCGCCCG--UCG-AGGaGgAGGUGC----CG- -5'
29381 5' -61.8 NC_006151.1 + 39767 0.67 0.540219
Target:  5'- gACGCGGGC-GCcgCCUUCgggcaCCgcGCGGCc -3'
miRNA:   3'- aUGCGCCCGuCGa-GGAGGa----GG--UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 88456 0.67 0.540219
Target:  5'- cGCGUGcGGCgcccgAGCUCgUCggCCACGGUg -3'
miRNA:   3'- aUGCGC-CCG-----UCGAGgAGgaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 20835 0.67 0.530584
Target:  5'- cGCGgGGGCAGaggUCguaCUCgGCGGCg -3'
miRNA:   3'- aUGCgCCCGUCga-GGag-GAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57990 0.67 0.530584
Target:  5'- aGCGCGccGCGGaccgCCUCCggcgcggCCGCGGCc -3'
miRNA:   3'- aUGCGCc-CGUCga--GGAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 64904 0.67 0.530584
Target:  5'- cACGCaGcGGCGcGCgagCa-CCUCCACGGCg -3'
miRNA:   3'- aUGCG-C-CCGU-CGa--GgaGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 124936 0.67 0.530584
Target:  5'- -uCGCGGGCccugGGCgCCUCCUUCGuCaGCg -3'
miRNA:   3'- auGCGCCCG----UCGaGGAGGAGGU-GcCG- -5'
29381 5' -61.8 NC_006151.1 + 80963 0.67 0.530584
Target:  5'- gGCGCcGGCcaugAGCUgCUCCUCCAUGu- -3'
miRNA:   3'- aUGCGcCCG----UCGAgGAGGAGGUGCcg -5'
29381 5' -61.8 NC_006151.1 + 101459 0.68 0.521013
Target:  5'- -cCGUGGGCcugGGcCUCUaCCgCCGCGGCg -3'
miRNA:   3'- auGCGCCCG---UC-GAGGaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 100765 0.68 0.521013
Target:  5'- cUGCGCGaGGCcGCggaCCgCgUCCugGGCg -3'
miRNA:   3'- -AUGCGC-CCGuCGa--GGaGgAGGugCCG- -5'
29381 5' -61.8 NC_006151.1 + 82655 0.68 0.521013
Target:  5'- gGCGaGGGCGGC-CCaCC-CUGCGGCg -3'
miRNA:   3'- aUGCgCCCGUCGaGGaGGaGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.