miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 18696 0.69 0.454368
Target:  5'- cGCGCGGGCGGCgCCggcgucgugacgCCgUCCACGu- -3'
miRNA:   3'- aUGCGCCCGUCGaGGa-----------GG-AGGUGCcg -5'
29381 5' -61.8 NC_006151.1 + 71591 0.69 0.456158
Target:  5'- -cCGCGGGCGccGCgucgucacaCCUCCaccaCCGCGGCc -3'
miRNA:   3'- auGCGCCCGU--CGa--------GGAGGa---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 136363 0.69 0.456158
Target:  5'- cGCG-GGGCuGCU-CUCgUUCGCGGCg -3'
miRNA:   3'- aUGCgCCCGuCGAgGAGgAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 129236 0.69 0.456158
Target:  5'- gGCGCGGGU-GCgCC-CCUCggugaCGCGGCg -3'
miRNA:   3'- aUGCGCCCGuCGaGGaGGAG-----GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 3946 0.69 0.456158
Target:  5'- gGCGCGGGCuccgcgGGC-CCgggCCg-CGCGGCg -3'
miRNA:   3'- aUGCGCCCG------UCGaGGa--GGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 64674 0.69 0.456158
Target:  5'- cGCGCGGcCAGCUCCUCaggCagcgaguuCGGCa -3'
miRNA:   3'- aUGCGCCcGUCGAGGAGga-Ggu------GCCG- -5'
29381 5' -61.8 NC_006151.1 + 69144 0.69 0.462454
Target:  5'- cGCGCGGGUGcucgacgccgugccGCUCgcaCUCCUCgGCGaGCa -3'
miRNA:   3'- aUGCGCCCGU--------------CGAG---GAGGAGgUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 72034 0.69 0.465166
Target:  5'- cGCGCGGGC-GCcccgCCgcgcagcgUCUCgGCGGCg -3'
miRNA:   3'- aUGCGCCCGuCGa---GGa-------GGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 58510 0.69 0.468795
Target:  5'- cGCGCGGGcCGGCcucgUCCUcguccuccucgccgcCCUCCcCGGUc -3'
miRNA:   3'- aUGCGCCC-GUCG----AGGA---------------GGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 97938 0.68 0.473352
Target:  5'- cGCGCccgcccucgucgaGGGCgAGCcacgCCUCCUCCaggucGCGGUg -3'
miRNA:   3'- aUGCG-------------CCCG-UCGa---GGAGGAGG-----UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 119070 0.68 0.474266
Target:  5'- -cCGCGGGCGcGCccgUCUCgCaggCCGCGGCg -3'
miRNA:   3'- auGCGCCCGU-CGa--GGAG-Ga--GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 58753 0.68 0.474266
Target:  5'- -cCGCGGccaccGCGGCcgCCgagCCcgUCCACGGCg -3'
miRNA:   3'- auGCGCC-----CGUCGa-GGa--GG--AGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 49217 0.68 0.474266
Target:  5'- gGCGCGGGgucccCGGCUCCcacgCC-CCGCucGGCu -3'
miRNA:   3'- aUGCGCCC-----GUCGAGGa---GGaGGUG--CCG- -5'
29381 5' -61.8 NC_006151.1 + 10529 0.68 0.474266
Target:  5'- gGCGCGGGCGcCUCUccacgccccguUCCgCC-CGGCg -3'
miRNA:   3'- aUGCGCCCGUcGAGG-----------AGGaGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 78671 0.68 0.483454
Target:  5'- gGCGCGGGUgcuggacgGGCUCUacgCCggCCGgGGCc -3'
miRNA:   3'- aUGCGCCCG--------UCGAGGa--GGa-GGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 129284 0.68 0.483454
Target:  5'- aGCGCGGcGC-GUUCCUCgggCGCGGCg -3'
miRNA:   3'- aUGCGCC-CGuCGAGGAGgagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 133333 0.68 0.483454
Target:  5'- cGCGcCGGGCGGC-Cgg-UUCCGCGGCg -3'
miRNA:   3'- aUGC-GCCCGUCGaGgagGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 137432 0.68 0.483454
Target:  5'- -cCGCGGGg---UCCgCCUCCGCGGCc -3'
miRNA:   3'- auGCGCCCgucgAGGaGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 37184 0.68 0.487153
Target:  5'- -cCGCGGccccGCGGCccucggCCUCCUCCgccuccuccuccgccGCGGCc -3'
miRNA:   3'- auGCGCC----CGUCGa-----GGAGGAGG---------------UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 15097 0.68 0.490865
Target:  5'- cACGCGGcGCcucggGGCcgacgugaaccgCCUCUUUCGCGGCa -3'
miRNA:   3'- aUGCGCC-CG-----UCGa-----------GGAGGAGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.