miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 134495 0.71 0.363076
Target:  5'- cUACGUcuucGGGC-GCUCgUCCcucaaccUCCGCGGCa -3'
miRNA:   3'- -AUGCG----CCCGuCGAGgAGG-------AGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 65986 0.7 0.371695
Target:  5'- -uCGCcGGCcGCgagcgCgUCCUCCGCGGCg -3'
miRNA:   3'- auGCGcCCGuCGa----GgAGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 86579 0.7 0.371695
Target:  5'- gGCGCGGGCGcGCUCCgagCUgCugGcGCg -3'
miRNA:   3'- aUGCGCCCGU-CGAGGag-GAgGugC-CG- -5'
29381 5' -61.8 NC_006151.1 + 121983 0.7 0.371695
Target:  5'- aGCGCaccauGGGCGGCgcgugCCgCUUCCACGcGCg -3'
miRNA:   3'- aUGCG-----CCCGUCGa----GGaGGAGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 86780 0.7 0.377253
Target:  5'- gAUGUGGGCggGGCUUCUgccuaaaagcggggCCUCCcCGGCg -3'
miRNA:   3'- aUGCGCCCG--UCGAGGA--------------GGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 6119 0.7 0.379651
Target:  5'- gACG-GGGCGGcCUCguggCUCCggCCGCGGCc -3'
miRNA:   3'- aUGCgCCCGUC-GAG----GAGGa-GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 74540 0.7 0.395902
Target:  5'- aGCGCGuGGUugAGCUCCUCCU--GgGGCu -3'
miRNA:   3'- aUGCGC-CCG--UCGAGGAGGAggUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 50462 0.7 0.404193
Target:  5'- -cCGCGGGC-GCUCgCgCCagCGCGGCg -3'
miRNA:   3'- auGCGCCCGuCGAG-GaGGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 135485 0.7 0.41344
Target:  5'- cGCGCGGGCcaGGCggcgcgcggccucggCCgaggccaucacgUCCUCgGCGGCg -3'
miRNA:   3'- aUGCGCCCG--UCGa--------------GG------------AGGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 36726 0.69 0.421102
Target:  5'- -cCGCGaGGCGGCUCgaUCCUCgGCcgcuuGGCg -3'
miRNA:   3'- auGCGC-CCGUCGAGg-AGGAGgUG-----CCG- -5'
29381 5' -61.8 NC_006151.1 + 68364 0.69 0.421102
Target:  5'- -cCGCcaGGCGGCaaagUCCUCCgucagggCCGCGGCc -3'
miRNA:   3'- auGCGc-CCGUCG----AGGAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 50101 0.69 0.438429
Target:  5'- gUACGCGauCAGCUCCgg-UCCGCGGUg -3'
miRNA:   3'- -AUGCGCccGUCGAGGaggAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 142158 0.69 0.438429
Target:  5'- gGCGCaGGgGGCUCgUCCaccUCCAUGGg -3'
miRNA:   3'- aUGCGcCCgUCGAGgAGG---AGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 29476 0.69 0.438429
Target:  5'- cGCGCcgggagaggaaaGGGCGcGCUggCCUcgagccagcCCUCCGCGGCg -3'
miRNA:   3'- aUGCG------------CCCGU-CGA--GGA---------GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 36914 0.69 0.438429
Target:  5'- cGCGCcGGagaGGCgcCCUCCgCCGCGGCc -3'
miRNA:   3'- aUGCGcCCg--UCGa-GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 49070 0.69 0.443707
Target:  5'- gGCGCGGGguGCcgauccccccgagCCUggccaacaUCUUCGCGGCg -3'
miRNA:   3'- aUGCGCCCguCGa------------GGA--------GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130863 0.69 0.447245
Target:  5'- gGCGCGGGCGGgaCCgcagugggCgGCGGCg -3'
miRNA:   3'- aUGCGCCCGUCgaGGagga----GgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 20733 0.69 0.447245
Target:  5'- gGCGCGagacgaacaGCAGCcggcgcgCCUCCaCCGCGGCg -3'
miRNA:   3'- aUGCGCc--------CGUCGa------GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 85464 0.69 0.447245
Target:  5'- -cCGCGGcCAGaaCCUCUUCCuCGGCg -3'
miRNA:   3'- auGCGCCcGUCgaGGAGGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130088 0.69 0.447245
Target:  5'- gGCGCGaGCAGCUCg-CgCUCCuCGGCc -3'
miRNA:   3'- aUGCGCcCGUCGAGgaG-GAGGuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.