miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 29476 0.69 0.438429
Target:  5'- cGCGCcgggagaggaaaGGGCGcGCUggCCUcgagccagcCCUCCGCGGCg -3'
miRNA:   3'- aUGCG------------CCCGU-CGA--GGA---------GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 30920 0.66 0.648767
Target:  5'- -cCGCGGGCGGC-CCgcgcggaucgCC-CgCGCGGUa -3'
miRNA:   3'- auGCGCCCGUCGaGGa---------GGaG-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 31592 0.66 0.648767
Target:  5'- gGCGCGcuccGC-GCUCCcCCgccgCCugGGCg -3'
miRNA:   3'- aUGCGCc---CGuCGAGGaGGa---GGugCCG- -5'
29381 5' -61.8 NC_006151.1 + 31778 0.78 0.125318
Target:  5'- cGCGcCGGGCGGCucUCCUCCUUCACcGCc -3'
miRNA:   3'- aUGC-GCCCGUCG--AGGAGGAGGUGcCG- -5'
29381 5' -61.8 NC_006151.1 + 32150 0.68 0.50208
Target:  5'- gGCGCGaGCGcUUCCUCCUCCGCa-- -3'
miRNA:   3'- aUGCGCcCGUcGAGGAGGAGGUGccg -5'
29381 5' -61.8 NC_006151.1 + 33899 0.66 0.63882
Target:  5'- gGCGgGGGCcucGCgCCUCCgcgUC-CGGCg -3'
miRNA:   3'- aUGCgCCCGu--CGaGGAGGa--GGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 36039 0.68 0.51151
Target:  5'- gGCGCc-GCGGCUCCUCCggcgaggaucUCCucuuCGGCc -3'
miRNA:   3'- aUGCGccCGUCGAGGAGG----------AGGu---GCCG- -5'
29381 5' -61.8 NC_006151.1 + 36726 0.69 0.421102
Target:  5'- -cCGCGaGGCGGCUCgaUCCUCgGCcgcuuGGCg -3'
miRNA:   3'- auGCGC-CCGUCGAGg-AGGAGgUG-----CCG- -5'
29381 5' -61.8 NC_006151.1 + 36914 0.69 0.438429
Target:  5'- cGCGCcGGagaGGCgcCCUCCgCCGCGGCc -3'
miRNA:   3'- aUGCGcCCg--UCGa-GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 37150 0.66 0.628869
Target:  5'- cGCGcCGGGCcGCcaCCgUCUCCGcCGGCg -3'
miRNA:   3'- aUGC-GCCCGuCGa-GGaGGAGGU-GCCG- -5'
29381 5' -61.8 NC_006151.1 + 37184 0.68 0.487153
Target:  5'- -cCGCGGccccGCGGCccucggCCUCCUCCgccuccuccuccgccGCGGCc -3'
miRNA:   3'- auGCGCC----CGUCGa-----GGAGGAGG---------------UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 38396 0.71 0.326389
Target:  5'- gGCgGCGGGCGccccCUCCggCCUCCcCGGCu -3'
miRNA:   3'- aUG-CGCCCGUc---GAGGa-GGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 38623 0.66 0.589156
Target:  5'- gGCucucCGGcGCGGC-CCUCCgcggggacggCCACGGCc -3'
miRNA:   3'- aUGc---GCC-CGUCGaGGAGGa---------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 39269 0.66 0.648767
Target:  5'- aACGCccagGGGguGCUgCUgCUCU-CGGCg -3'
miRNA:   3'- aUGCG----CCCguCGAgGAgGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 39767 0.67 0.540219
Target:  5'- gACGCGGGC-GCcgCCUUCgggcaCCgcGCGGCc -3'
miRNA:   3'- aUGCGCCCGuCGa-GGAGGa----GG--UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 44183 0.66 0.63882
Target:  5'- -cCGCGGGUcGC-CgUCCgggCgGCGGCg -3'
miRNA:   3'- auGCGCCCGuCGaGgAGGa--GgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 49070 0.69 0.443707
Target:  5'- gGCGCGGGguGCcgauccccccgagCCUggccaacaUCUUCGCGGCg -3'
miRNA:   3'- aUGCGCCCguCGa------------GGA--------GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 49217 0.68 0.474266
Target:  5'- gGCGCGGGgucccCGGCUCCcacgCC-CCGCucGGCu -3'
miRNA:   3'- aUGCGCCC-----GUCGAGGa---GGaGGUG--CCG- -5'
29381 5' -61.8 NC_006151.1 + 50101 0.69 0.438429
Target:  5'- gUACGCGauCAGCUCCgg-UCCGCGGUg -3'
miRNA:   3'- -AUGCGCccGUCGAGGaggAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 50387 0.71 0.326389
Target:  5'- gACGCGGGCcccGCgg-UCCUCgCGCGGCc -3'
miRNA:   3'- aUGCGCCCGu--CGaggAGGAG-GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.