miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 44183 0.66 0.63882
Target:  5'- -cCGCGGGUcGC-CgUCCgggCgGCGGCg -3'
miRNA:   3'- auGCGCCCGuCGaGgAGGa--GgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 69325 0.66 0.61892
Target:  5'- gUGCGCGGGC-GCgucgCCgcCCgcgagCGCGGCg -3'
miRNA:   3'- -AUGCGCCCGuCGa---GGa-GGag---GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 87140 0.66 0.61892
Target:  5'- cUGCGCGcccaGCAGCUCCgcuacccgacgCCguacuacgcgcCCGCGGCg -3'
miRNA:   3'- -AUGCGCc---CGUCGAGGa----------GGa----------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 127739 0.66 0.61892
Target:  5'- -uCGCGGGCGGgaaccggucaucCUCCUCCUCUuccuCGuCg -3'
miRNA:   3'- auGCGCCCGUC------------GAGGAGGAGGu---GCcG- -5'
29381 5' -61.8 NC_006151.1 + 26388 0.66 0.61892
Target:  5'- --gGCGGGCGGCgUCCUUC-CCGCc-- -3'
miRNA:   3'- augCGCCCGUCG-AGGAGGaGGUGccg -5'
29381 5' -61.8 NC_006151.1 + 58315 0.66 0.628869
Target:  5'- gGCGUuucaGcGGCGGCgcgCCggCCUCCGCguaGGCg -3'
miRNA:   3'- aUGCG----C-CCGUCGa--GGa-GGAGGUG---CCG- -5'
29381 5' -61.8 NC_006151.1 + 76001 0.66 0.628869
Target:  5'- cACGCGGcGCuucAGCUCCgacaCgagCGCGGCg -3'
miRNA:   3'- aUGCGCC-CG---UCGAGGag--Gag-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 131106 0.66 0.628869
Target:  5'- --gGCGGGgGGC-CCgg--CCGCGGCg -3'
miRNA:   3'- augCGCCCgUCGaGGaggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 2327 0.66 0.628869
Target:  5'- aGCG-GGGCGGcCUCggcgucgggCUCCagcagcgCCGCGGCg -3'
miRNA:   3'- aUGCgCCCGUC-GAG---------GAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 37150 0.66 0.628869
Target:  5'- cGCGcCGGGCcGCcaCCgUCUCCGcCGGCg -3'
miRNA:   3'- aUGC-GCCCGuCGa-GGaGGAGGU-GCCG- -5'
29381 5' -61.8 NC_006151.1 + 132715 0.66 0.628869
Target:  5'- uUGC-CGGGCAgGCacgagaaaggUCCUCguuccagcgCUCCAUGGCg -3'
miRNA:   3'- -AUGcGCCCGU-CG----------AGGAG---------GAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 33899 0.66 0.63882
Target:  5'- gGCGgGGGCcucGCgCCUCCgcgUC-CGGCg -3'
miRNA:   3'- aUGCgCCCGu--CGaGGAGGa--GGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 19304 0.67 0.553804
Target:  5'- gGCGCGGGCGGCcggucgCCcaccgCCacaaagaacacggcCCGCGGCc -3'
miRNA:   3'- aUGCGCCCGUCGa-----GGa----GGa-------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 9395 0.67 0.558681
Target:  5'- cGCGCGGGUcgGGCcuUCUUCC-CCAuccccgcCGGCc -3'
miRNA:   3'- aUGCGCCCG--UCG--AGGAGGaGGU-------GCCG- -5'
29381 5' -61.8 NC_006151.1 + 101711 0.67 0.559658
Target:  5'- --aGCGGGCGGUgcCCUCCgugcacCCgAUGGCc -3'
miRNA:   3'- augCGCCCGUCGa-GGAGGa-----GG-UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 97605 0.67 0.559658
Target:  5'- cACGCGGGCAcguGCaCCUgCga-GCGGCg -3'
miRNA:   3'- aUGCGCCCGU---CGaGGAgGaggUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 137614 0.67 0.568469
Target:  5'- gGCGCGGGCggggaccccGGCgCCUCCgcccucgUCCGCgcccccgucccGGCg -3'
miRNA:   3'- aUGCGCCCG---------UCGaGGAGG-------AGGUG-----------CCG- -5'
29381 5' -61.8 NC_006151.1 + 128757 0.67 0.569451
Target:  5'- --aGCGGGCgcauguaguaGGCguaCCg-CUCCACGGCc -3'
miRNA:   3'- augCGCCCG----------UCGa--GGagGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 83658 0.67 0.569451
Target:  5'- gACGaGGGCcGCgUCCUCCUCgCucaGGCu -3'
miRNA:   3'- aUGCgCCCGuCG-AGGAGGAG-Gug-CCG- -5'
29381 5' -61.8 NC_006151.1 + 106204 0.67 0.550884
Target:  5'- --gGCGGuGCGGCUcgcCCUCCccgaccugaugguggCCGCGGUg -3'
miRNA:   3'- augCGCC-CGUCGA---GGAGGa--------------GGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.