miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 88381 0.66 0.648767
Target:  5'- gGCGCGaGC-GCgUCCgcggCgUCCGCGGCc -3'
miRNA:   3'- aUGCGCcCGuCG-AGGa---GgAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 105812 0.66 0.648767
Target:  5'- gACGCGGacGCGGUg-UUCC-CCACGGUc -3'
miRNA:   3'- aUGCGCC--CGUCGagGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 132643 0.66 0.648767
Target:  5'- gGCGCccggaccuGGGCcGCcaCCUCgUCCGCGGa -3'
miRNA:   3'- aUGCG--------CCCGuCGa-GGAGgAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 101865 0.66 0.648767
Target:  5'- --gGCGGcGCAccGCUCCcgCCgccgCCGCGGg -3'
miRNA:   3'- augCGCC-CGU--CGAGGa-GGa---GGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 69717 0.66 0.649761
Target:  5'- -cCGgGGGCAGCagcgcgucgauguggCC-CC-CCGCGGCc -3'
miRNA:   3'- auGCgCCCGUCGa--------------GGaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 33899 0.66 0.63882
Target:  5'- gGCGgGGGCcucGCgCCUCCgcgUC-CGGCg -3'
miRNA:   3'- aUGCgCCCGu--CGaGGAGGa--GGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 132715 0.66 0.628869
Target:  5'- uUGC-CGGGCAgGCacgagaaaggUCCUCguuccagcgCUCCAUGGCg -3'
miRNA:   3'- -AUGcGCCCGU-CG----------AGGAG---------GAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 74656 0.66 0.617925
Target:  5'- gGCGCaguccucGGGCAGCUCC-CCguugcCCA-GGUa -3'
miRNA:   3'- aUGCG-------CCCGUCGAGGaGGa----GGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 135584 0.66 0.617925
Target:  5'- gAgGCGgaguucguccGGCGGCUcauaagcCCUCCcacggCCGCGGCg -3'
miRNA:   3'- aUgCGC----------CCGUCGA-------GGAGGa----GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 29064 0.66 0.61892
Target:  5'- gUugGCGGcGCcGCgggCC-CCgagacggCCGCGGCg -3'
miRNA:   3'- -AugCGCC-CGuCGa--GGaGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57153 0.66 0.61892
Target:  5'- gGCGgGGGCgagGGCgUCCcCCggCGCGGCc -3'
miRNA:   3'- aUGCgCCCG---UCG-AGGaGGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 69325 0.66 0.61892
Target:  5'- gUGCGCGGGC-GCgucgCCgcCCgcgagCGCGGCg -3'
miRNA:   3'- -AUGCGCCCGuCGa---GGa-GGag---GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 87140 0.66 0.61892
Target:  5'- cUGCGCGcccaGCAGCUCCgcuacccgacgCCguacuacgcgcCCGCGGCg -3'
miRNA:   3'- -AUGCGCc---CGUCGAGGa----------GGa----------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 127739 0.66 0.61892
Target:  5'- -uCGCGGGCGGgaaccggucaucCUCCUCCUCUuccuCGuCg -3'
miRNA:   3'- auGCGCCCGUC------------GAGGAGGAGGu---GCcG- -5'
29381 5' -61.8 NC_006151.1 + 26388 0.66 0.61892
Target:  5'- --gGCGGGCGGCgUCCUUC-CCGCc-- -3'
miRNA:   3'- augCGCCCGUCG-AGGAGGaGGUGccg -5'
29381 5' -61.8 NC_006151.1 + 58315 0.66 0.628869
Target:  5'- gGCGUuucaGcGGCGGCgcgCCggCCUCCGCguaGGCg -3'
miRNA:   3'- aUGCG----C-CCGUCGa--GGa-GGAGGUG---CCG- -5'
29381 5' -61.8 NC_006151.1 + 76001 0.66 0.628869
Target:  5'- cACGCGGcGCuucAGCUCCgacaCgagCGCGGCg -3'
miRNA:   3'- aUGCGCC-CG---UCGAGGag--Gag-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 131106 0.66 0.628869
Target:  5'- --gGCGGGgGGC-CCgg--CCGCGGCg -3'
miRNA:   3'- augCGCCCgUCGaGGaggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 2327 0.66 0.628869
Target:  5'- aGCG-GGGCGGcCUCggcgucgggCUCCagcagcgCCGCGGCg -3'
miRNA:   3'- aUGCgCCCGUC-GAG---------GAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 37150 0.66 0.628869
Target:  5'- cGCGcCGGGCcGCcaCCgUCUCCGcCGGCg -3'
miRNA:   3'- aUGC-GCCCGuCGa-GGaGGAGGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.