miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 15097 0.68 0.490865
Target:  5'- cACGCGGcGCcucggGGCcgacgugaaccgCCUCUUUCGCGGCa -3'
miRNA:   3'- aUGCGCC-CG-----UCGa-----------GGAGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 17017 0.66 0.606001
Target:  5'- gGCGCGGGUGGCcgggaUCCcggcgacgaucacgUCCAgGGCg -3'
miRNA:   3'- aUGCGCCCGUCGagg--AGG--------------AGGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 17464 0.66 0.599057
Target:  5'- cACGUGuugccGCGGCgugUCCUCgUCgGCGGCg -3'
miRNA:   3'- aUGCGCc----CGUCG---AGGAGgAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 18181 0.67 0.549911
Target:  5'- aAUGCGGGCGGg-CCggUUCUCC-CGGUa -3'
miRNA:   3'- aUGCGCCCGUCgaGG--AGGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 18696 0.69 0.454368
Target:  5'- cGCGCGGGCGGCgCCggcgucgugacgCCgUCCACGu- -3'
miRNA:   3'- aUGCGCCCGUCGaGGa-----------GG-AGGUGCcg -5'
29381 5' -61.8 NC_006151.1 + 19304 0.67 0.553804
Target:  5'- gGCGCGGGCGGCcggucgCCcaccgCCacaaagaacacggcCCGCGGCc -3'
miRNA:   3'- aUGCGCCCGUCGa-----GGa----GGa-------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 19438 0.73 0.272553
Target:  5'- gACGaUGGGCGGCUCgCgCUggagCCGCGGCa -3'
miRNA:   3'- aUGC-GCCCGUCGAG-GaGGa---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 20587 0.66 0.599057
Target:  5'- gACGaCGGGcCGGCa-CUCgUCCGCGGa -3'
miRNA:   3'- aUGC-GCCC-GUCGagGAGgAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 20733 0.69 0.447245
Target:  5'- gGCGCGagacgaacaGCAGCcggcgcgCCUCCaCCGCGGCg -3'
miRNA:   3'- aUGCGCc--------CGUCGa------GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 20835 0.67 0.530584
Target:  5'- cGCGgGGGCAGaggUCguaCUCgGCGGCg -3'
miRNA:   3'- aUGCgCCCGUCga-GGag-GAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 21504 0.66 0.60898
Target:  5'- gGCGCGGGCgucaccggggcgGGCUCgggCUUCggCCGgGGCc -3'
miRNA:   3'- aUGCGCCCG------------UCGAG---GAGGa-GGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 22289 0.67 0.540219
Target:  5'- gGCGCGGGCacGGCgUCCaCgUCCGCGccgaGCg -3'
miRNA:   3'- aUGCGCCCG--UCG-AGGaGgAGGUGC----CG- -5'
29381 5' -61.8 NC_006151.1 + 23094 0.67 0.540219
Target:  5'- -uCGCuggaGGuCAGCUCCucgUCCUCCuCGGCc -3'
miRNA:   3'- auGCGc---CC-GUCGAGG---AGGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 25409 0.66 0.645784
Target:  5'- gACGgGGGCGccgccgccccacgcGCgcccgucaucCCUCC-CCGCGGCc -3'
miRNA:   3'- aUGCgCCCGU--------------CGa---------GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 26327 0.68 0.51151
Target:  5'- aGCGCGGGgcgaGGC-CCgCCUCacgggGCGGCg -3'
miRNA:   3'- aUGCGCCCg---UCGaGGaGGAGg----UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 26388 0.66 0.61892
Target:  5'- --gGCGGGCGGCgUCCUUC-CCGCc-- -3'
miRNA:   3'- augCGCCCGUCG-AGGAGGaGGUGccg -5'
29381 5' -61.8 NC_006151.1 + 28107 0.72 0.278873
Target:  5'- aGCGgGGcGCGGCUCCUCgUCgGCucggGGCg -3'
miRNA:   3'- aUGCgCC-CGUCGAGGAGgAGgUG----CCG- -5'
29381 5' -61.8 NC_006151.1 + 28286 0.71 0.326389
Target:  5'- gACGCGGGCccGGCUCCcCCaUUgGcCGGCg -3'
miRNA:   3'- aUGCGCCCG--UCGAGGaGG-AGgU-GCCG- -5'
29381 5' -61.8 NC_006151.1 + 28846 0.71 0.326389
Target:  5'- gACGCGGGCccGGCUCCcCCaUUgGcCGGCg -3'
miRNA:   3'- aUGCGCCCG--UCGAGGaGG-AGgU-GCCG- -5'
29381 5' -61.8 NC_006151.1 + 29064 0.66 0.61892
Target:  5'- gUugGCGGcGCcGCgggCC-CCgagacggCCGCGGCg -3'
miRNA:   3'- -AugCGCC-CGuCGa--GGaGGa------GGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.