miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 106367 0.72 0.298532
Target:  5'- gACGCGGGCGcGCg---CCcgCCGCGGCg -3'
miRNA:   3'- aUGCGCCCGU-CGaggaGGa-GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 119435 0.72 0.298532
Target:  5'- gACGCGGGCAcGUUCgUgggCCGCGGCg -3'
miRNA:   3'- aUGCGCCCGU-CGAGgAggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 127663 0.72 0.304636
Target:  5'- cACGCcgaucccGGGCGGgaaCUCCUCgUCgGCGGCg -3'
miRNA:   3'- aUGCG-------CCCGUC---GAGGAGgAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 101290 0.72 0.31854
Target:  5'- gGCGCGGGCGGCgCCgcgcugcacugcgUCUUCuCGCGGg -3'
miRNA:   3'- aUGCGCCCGUCGaGG-------------AGGAG-GUGCCg -5'
29381 5' -61.8 NC_006151.1 + 50387 0.71 0.326389
Target:  5'- gACGCGGGCcccGCgg-UCCUCgCGCGGCc -3'
miRNA:   3'- aUGCGCCCGu--CGaggAGGAG-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 97272 0.71 0.326389
Target:  5'- cACaCGGGCAGCg---CCUCgGCGGCg -3'
miRNA:   3'- aUGcGCCCGUCGaggaGGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 28286 0.71 0.326389
Target:  5'- gACGCGGGCccGGCUCCcCCaUUgGcCGGCg -3'
miRNA:   3'- aUGCGCCCG--UCGAGGaGG-AGgU-GCCG- -5'
29381 5' -61.8 NC_006151.1 + 38396 0.71 0.326389
Target:  5'- gGCgGCGGGCGccccCUCCggCCUCCcCGGCu -3'
miRNA:   3'- aUG-CGCCCGUc---GAGGa-GGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 28846 0.71 0.326389
Target:  5'- gACGCGGGCccGGCUCCcCCaUUgGcCGGCg -3'
miRNA:   3'- aUGCGCCCG--UCGAGGaGG-AGgU-GCCG- -5'
29381 5' -61.8 NC_006151.1 + 53893 0.71 0.33073
Target:  5'- gUACGCggcgaaGGGCAGCUCCagcgccucuauaUCCaccggguuguccgCCGCGGCg -3'
miRNA:   3'- -AUGCG------CCCGUCGAGG------------AGGa------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 123077 0.71 0.333647
Target:  5'- aGCGCcGGCGGCgCCUguacgcggaccgCCUCuCGCGGCg -3'
miRNA:   3'- aUGCGcCCGUCGaGGA------------GGAG-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 141474 0.71 0.333647
Target:  5'- -cCGgGGGC-GCcgagUCCgagagCCUCCGCGGCg -3'
miRNA:   3'- auGCgCCCGuCG----AGGa----GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 91085 0.71 0.340281
Target:  5'- -cCGCGGGCgAGCgcgaaggUCgUCCcggCCGCGGCg -3'
miRNA:   3'- auGCGCCCG-UCG-------AGgAGGa--GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 82297 0.71 0.341023
Target:  5'- cGCG-GGGCAGCgcgCCUCCgcgUCCgcgaggACGGCc -3'
miRNA:   3'- aUGCgCCCGUCGa--GGAGG---AGG------UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 105690 0.71 0.341023
Target:  5'- gGCGCGGGgccgacgcCGGCgcggCCgcgcgCCUCgACGGCg -3'
miRNA:   3'- aUGCGCCC--------GUCGa---GGa----GGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 53963 0.71 0.348517
Target:  5'- cACGCcagcGGCGGCggcgCCUCCgcgggcgUCGCGGCg -3'
miRNA:   3'- aUGCGc---CCGUCGa---GGAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 5009 0.71 0.353069
Target:  5'- cGCGgGGGCcgggcgGGCUCCggggCCggggccggggaggCCGCGGCg -3'
miRNA:   3'- aUGCgCCCG------UCGAGGa---GGa------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 131783 0.71 0.356127
Target:  5'- -cCGCGGGCgccgccgucgucAGCgcgCCaUCCUCCuCGGCc -3'
miRNA:   3'- auGCGCCCG------------UCGa--GG-AGGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 2202 0.71 0.356127
Target:  5'- -cCGCGGGcCGGUggg-UCUCCACGGCg -3'
miRNA:   3'- auGCGCCC-GUCGaggaGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 57504 0.71 0.359204
Target:  5'- cACGCGcucggccgcggcggcGGCGGCcgCCUCCggCGCGGCc -3'
miRNA:   3'- aUGCGC---------------CCGUCGa-GGAGGagGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.