miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 132555 1.08 0.00085
Target:  5'- gUACGCGGGCAGCUCCUCCUCCACGGCc -3'
miRNA:   3'- -AUGCGCCCGUCGAGGAGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 94676 0.83 0.051973
Target:  5'- --gGCGGGCAGCUCC-CCgaaggCCGCGGCc -3'
miRNA:   3'- augCGCCCGUCGAGGaGGa----GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 65501 0.81 0.071181
Target:  5'- gACGCcGGCggAGCgcgCCUCCUCCGCGGCc -3'
miRNA:   3'- aUGCGcCCG--UCGa--GGAGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 31778 0.78 0.125318
Target:  5'- cGCGcCGGGCGGCucUCCUCCUUCACcGCc -3'
miRNA:   3'- aUGC-GCCCGUCG--AGGAGGAGGUGcCG- -5'
29381 5' -61.8 NC_006151.1 + 90671 0.77 0.138601
Target:  5'- gGCgGCGGGCcGCUUgUCCcCCGCGGCg -3'
miRNA:   3'- aUG-CGCCCGuCGAGgAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 729 0.77 0.145716
Target:  5'- -cCGCGGGCgggGGCUUC-CgCUCCGCGGCg -3'
miRNA:   3'- auGCGCCCG---UCGAGGaG-GAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 131908 0.77 0.149397
Target:  5'- gACGgGGGCGGCagCagggCCUCCGCGGUg -3'
miRNA:   3'- aUGCgCCCGUCGagGa---GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 123036 0.76 0.17331
Target:  5'- gGCGUGGGCGGa-CCUgCCggCCGCGGCg -3'
miRNA:   3'- aUGCGCCCGUCgaGGA-GGa-GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 64500 0.76 0.177613
Target:  5'- gGCGCGGGCGGCgggcgcgcgCCgccaaaggCCgCCGCGGCc -3'
miRNA:   3'- aUGCGCCCGUCGa--------GGa-------GGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 69059 0.75 0.200578
Target:  5'- gGCaGC-GGCGGCUCCUCgUCCcccaGCGGCa -3'
miRNA:   3'- aUG-CGcCCGUCGAGGAGgAGG----UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 132055 0.75 0.200578
Target:  5'- aGCGCGgcggagaacGGCGGCUCCUCgaCCAgguCGGCg -3'
miRNA:   3'- aUGCGC---------CCGUCGAGGAGgaGGU---GCCG- -5'
29381 5' -61.8 NC_006151.1 + 15052 0.74 0.210466
Target:  5'- cGCGCGGGgcccCGGCgCCUUCUgCGCGGCc -3'
miRNA:   3'- aUGCGCCC----GUCGaGGAGGAgGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 72466 0.74 0.215565
Target:  5'- aGCGUaGGCAGCgcaaugUCCaCCUCCAUGGCg -3'
miRNA:   3'- aUGCGcCCGUCG------AGGaGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 102702 0.74 0.220771
Target:  5'- gGCGCGGGCGGCgcggCCgagCCgaaCACGcGCg -3'
miRNA:   3'- aUGCGCCCGUCGa---GGa--GGag-GUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 4358 0.74 0.239274
Target:  5'- gACGCGGGCgcagagggccucgacGGUcgCCUCCccggcgcgggggUCCGCGGCg -3'
miRNA:   3'- aUGCGCCCG---------------UCGa-GGAGG------------AGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 141887 0.73 0.248421
Target:  5'- gGC-CGGGCAucgaGCUCCaCCUCCACGcGCc -3'
miRNA:   3'- aUGcGCCCGU----CGAGGaGGAGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 134763 0.73 0.254283
Target:  5'- cGCGCGGggcccGCGGCUUCggCUCCACGGg -3'
miRNA:   3'- aUGCGCC-----CGUCGAGGagGAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 19438 0.73 0.272553
Target:  5'- gACGaUGGGCGGCUCgCgCUggagCCGCGGCa -3'
miRNA:   3'- aUGC-GCCCGUCGAG-GaGGa---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 28107 0.72 0.278873
Target:  5'- aGCGgGGcGCGGCUCCUCgUCgGCucggGGCg -3'
miRNA:   3'- aUGCgCC-CGUCGAGGAGgAGgUG----CCG- -5'
29381 5' -61.8 NC_006151.1 + 64821 0.72 0.28531
Target:  5'- --gGCGGcCAGCUCCUCCUCgAggaugucccCGGCg -3'
miRNA:   3'- augCGCCcGUCGAGGAGGAGgU---------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.