miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 729 0.77 0.145716
Target:  5'- -cCGCGGGCgggGGCUUC-CgCUCCGCGGCg -3'
miRNA:   3'- auGCGCCCG---UCGAGGaG-GAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 2202 0.71 0.356127
Target:  5'- -cCGCGGGcCGGUggg-UCUCCACGGCg -3'
miRNA:   3'- auGCGCCC-GUCGaggaGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 2327 0.66 0.628869
Target:  5'- aGCG-GGGCGGcCUCggcgucgggCUCCagcagcgCCGCGGCg -3'
miRNA:   3'- aUGCgCCCGUC-GAG---------GAGGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 3088 0.66 0.60898
Target:  5'- aAgGCGGcgaGCAGCgCCgagaggCCgCCGCGGCg -3'
miRNA:   3'- aUgCGCC---CGUCGaGGa-----GGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 3371 0.68 0.50302
Target:  5'- cGgGCGGGCAGUaggcggcgagggccgCCUCggagggCCGCGGCg -3'
miRNA:   3'- aUgCGCCCGUCGa--------------GGAGga----GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 3946 0.69 0.456158
Target:  5'- gGCGCGGGCuccgcgGGC-CCgggCCg-CGCGGCg -3'
miRNA:   3'- aUGCGCCCG------UCGaGGa--GGagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 4052 0.66 0.645784
Target:  5'- gGCGCGGGCcccguccacgcuguAGCgcaCCagCggcgCCACGGUg -3'
miRNA:   3'- aUGCGCCCG--------------UCGa--GGagGa---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 4170 0.68 0.51151
Target:  5'- aGCGCGaGCAGCgcggCCgucaCCUCCucgaGGCa -3'
miRNA:   3'- aUGCGCcCGUCGa---GGa---GGAGGug--CCG- -5'
29381 5' -61.8 NC_006151.1 + 4358 0.74 0.239274
Target:  5'- gACGCGGGCgcagagggccucgacGGUcgCCUCCccggcgcgggggUCCGCGGCg -3'
miRNA:   3'- aUGCGCCCG---------------UCGa-GGAGG------------AGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 5009 0.71 0.353069
Target:  5'- cGCGgGGGCcgggcgGGCUCCggggCCggggccggggaggCCGCGGCg -3'
miRNA:   3'- aUGCgCCCG------UCGAGGa---GGa------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 6119 0.7 0.379651
Target:  5'- gACG-GGGCGGcCUCguggCUCCggCCGCGGCc -3'
miRNA:   3'- aUGCgCCCGUC-GAG----GAGGa-GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 6149 0.68 0.50208
Target:  5'- -cCGCGaGGaCGGCggCCUcggCCUCgGCGGCg -3'
miRNA:   3'- auGCGC-CC-GUCGa-GGA---GGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 8296 0.67 0.579286
Target:  5'- cGCGCGGGCGccgcgucccGCcCCgagCCcCCGgGGCg -3'
miRNA:   3'- aUGCGCCCGU---------CGaGGa--GGaGGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 9395 0.67 0.558681
Target:  5'- cGCGCGGGUcgGGCcuUCUUCC-CCAuccccgcCGGCc -3'
miRNA:   3'- aUGCGCCCG--UCG--AGGAGGaGGU-------GCCG- -5'
29381 5' -61.8 NC_006151.1 + 10203 0.66 0.589156
Target:  5'- gGCGCGGGCGGCggCUgCagagGCGGCu -3'
miRNA:   3'- aUGCGCCCGUCGagGAgGagg-UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 10529 0.68 0.474266
Target:  5'- gGCGCGGGCGcCUCUccacgccccguUCCgCC-CGGCg -3'
miRNA:   3'- aUGCGCCCGUcGAGG-----------AGGaGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 11212 0.66 0.585204
Target:  5'- gGCGCGuccGGgaaGGCUUCUCCcgggccgcgagggCCGCGGCg -3'
miRNA:   3'- aUGCGC---CCg--UCGAGGAGGa------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 11356 0.67 0.541186
Target:  5'- -cCGCGGGCGcuaccgcgcgcuccGCUcgccgccucuuccccCCUCCUCCGCcGCc -3'
miRNA:   3'- auGCGCCCGU--------------CGA---------------GGAGGAGGUGcCG- -5'
29381 5' -61.8 NC_006151.1 + 13709 0.68 0.50208
Target:  5'- gACGCGGGCacGGCUCCcCCauuggccggUCC-CGGa -3'
miRNA:   3'- aUGCGCCCG--UCGAGGaGG---------AGGuGCCg -5'
29381 5' -61.8 NC_006151.1 + 15052 0.74 0.210466
Target:  5'- cGCGCGGGgcccCGGCgCCUUCUgCGCGGCc -3'
miRNA:   3'- aUGCGCCC----GUCGaGGAGGAgGUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.