miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 142158 0.69 0.438429
Target:  5'- gGCGCaGGgGGCUCgUCCaccUCCAUGGg -3'
miRNA:   3'- aUGCGcCCgUCGAGgAGG---AGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 141887 0.73 0.248421
Target:  5'- gGC-CGGGCAucgaGCUCCaCCUCCACGcGCc -3'
miRNA:   3'- aUGcGCCCGU----CGAGGaGGAGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 141663 0.68 0.492726
Target:  5'- -cCGCGGGCucguuguggaGGCaugUCUgCCUCCcACGGCg -3'
miRNA:   3'- auGCGCCCG----------UCGa--GGA-GGAGG-UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 141474 0.71 0.333647
Target:  5'- -cCGgGGGC-GCcgagUCCgagagCCUCCGCGGCg -3'
miRNA:   3'- auGCgCCCGuCG----AGGa----GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 141311 0.66 0.589156
Target:  5'- gUACGCGGGCGGgUCCgggauggucaCCgcguaCGCGGg -3'
miRNA:   3'- -AUGCGCCCGUCgAGGa---------GGag---GUGCCg -5'
29381 5' -61.8 NC_006151.1 + 140145 0.68 0.521013
Target:  5'- cACGUGGGUcaAGCUCaUCCUCaccaaGgGGCu -3'
miRNA:   3'- aUGCGCCCG--UCGAGgAGGAGg----UgCCG- -5'
29381 5' -61.8 NC_006151.1 + 138906 0.66 0.63882
Target:  5'- cUACGCGGcgaGCGuGCUCg-CCgCCACGGUc -3'
miRNA:   3'- -AUGCGCC---CGU-CGAGgaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 137614 0.67 0.568469
Target:  5'- gGCGCGGGCggggaccccGGCgCCUCCgcccucgUCCGCgcccccgucccGGCg -3'
miRNA:   3'- aUGCGCCCG---------UCGaGGAGG-------AGGUG-----------CCG- -5'
29381 5' -61.8 NC_006151.1 + 137432 0.68 0.483454
Target:  5'- -cCGCGGGg---UCCgCCUCCGCGGCc -3'
miRNA:   3'- auGCGCCCgucgAGGaGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 136671 0.67 0.549911
Target:  5'- aGCGCGcGGCcGCcgccuUCUUCCgCCACGuGCg -3'
miRNA:   3'- aUGCGC-CCGuCG-----AGGAGGaGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 136363 0.69 0.456158
Target:  5'- cGCG-GGGCuGCU-CUCgUUCGCGGCg -3'
miRNA:   3'- aUGCgCCCGuCGAgGAGgAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 136156 0.66 0.589156
Target:  5'- gACGCuGGCcGCcuUCCggcgCCUCUACGGg -3'
miRNA:   3'- aUGCGcCCGuCG--AGGa---GGAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 135584 0.66 0.617925
Target:  5'- gAgGCGgaguucguccGGCGGCUcauaagcCCUCCcacggCCGCGGCg -3'
miRNA:   3'- aUgCGC----------CCGUCGA-------GGAGGa----GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 135485 0.7 0.41344
Target:  5'- cGCGCGGGCcaGGCggcgcgcggccucggCCgaggccaucacgUCCUCgGCGGCg -3'
miRNA:   3'- aUGCGCCCG--UCGa--------------GG------------AGGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 134763 0.73 0.254283
Target:  5'- cGCGCGGggcccGCGGCUUCggCUCCACGGg -3'
miRNA:   3'- aUGCGCC-----CGUCGAGGagGAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 134495 0.71 0.363076
Target:  5'- cUACGUcuucGGGC-GCUCgUCCcucaaccUCCGCGGCa -3'
miRNA:   3'- -AUGCG----CCCGuCGAGgAGG-------AGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 133673 0.66 0.649761
Target:  5'- gGCGCGG-CGGCgcgcccccgaggcggUCUCgUCgGCGGCg -3'
miRNA:   3'- aUGCGCCcGUCGa--------------GGAGgAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 133333 0.68 0.483454
Target:  5'- cGCGcCGGGCGGC-Cgg-UUCCGCGGCg -3'
miRNA:   3'- aUGC-GCCCGUCGaGgagGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 133163 0.68 0.50208
Target:  5'- gGCGCGGGCGuGggCCUCggCCACGcGUc -3'
miRNA:   3'- aUGCGCCCGU-CgaGGAGgaGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 132715 0.66 0.628869
Target:  5'- uUGC-CGGGCAgGCacgagaaaggUCCUCguuccagcgCUCCAUGGCg -3'
miRNA:   3'- -AUGcGCCCGU-CG----------AGGAG---------GAGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.