miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 132643 0.66 0.648767
Target:  5'- gGCGCccggaccuGGGCcGCcaCCUCgUCCGCGGa -3'
miRNA:   3'- aUGCG--------CCCGuCGa-GGAGgAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 132555 1.08 0.00085
Target:  5'- gUACGCGGGCAGCUCCUCCUCCACGGCc -3'
miRNA:   3'- -AUGCGCCCGUCGAGGAGGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 132055 0.75 0.200578
Target:  5'- aGCGCGgcggagaacGGCGGCUCCUCgaCCAgguCGGCg -3'
miRNA:   3'- aUGCGC---------CCGUCGAGGAGgaGGU---GCCG- -5'
29381 5' -61.8 NC_006151.1 + 131908 0.77 0.149397
Target:  5'- gACGgGGGCGGCagCagggCCUCCGCGGUg -3'
miRNA:   3'- aUGCgCCCGUCGagGa---GGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 131783 0.71 0.356127
Target:  5'- -cCGCGGGCgccgccgucgucAGCgcgCCaUCCUCCuCGGCc -3'
miRNA:   3'- auGCGCCCG------------UCGa--GG-AGGAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 131106 0.66 0.628869
Target:  5'- --gGCGGGgGGC-CCgg--CCGCGGCg -3'
miRNA:   3'- augCGCCCgUCGaGGaggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130863 0.69 0.447245
Target:  5'- gGCGCGGGCGGgaCCgcagugggCgGCGGCg -3'
miRNA:   3'- aUGCGCCCGUCgaGGagga----GgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130711 0.68 0.51151
Target:  5'- gACG-GGGCGGC-CCgggggCCcgcgcggCCGCGGCg -3'
miRNA:   3'- aUGCgCCCGUCGaGGa----GGa------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130329 0.66 0.599057
Target:  5'- cGCGCucGGGgAGCUCgCgcg-CCGCGGCg -3'
miRNA:   3'- aUGCG--CCCgUCGAG-GaggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130133 0.67 0.546028
Target:  5'- -cCGUGGGCGcGCgccagcagguacaCCUCUgCCACGGCc -3'
miRNA:   3'- auGCGCCCGU-CGa------------GGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130088 0.69 0.447245
Target:  5'- gGCGCGaGCAGCUCg-CgCUCCuCGGCc -3'
miRNA:   3'- aUGCGCcCGUCGAGgaG-GAGGuGCCG- -5'
29381 5' -61.8 NC_006151.1 + 129284 0.68 0.483454
Target:  5'- aGCGCGGcGC-GUUCCUCgggCGCGGCg -3'
miRNA:   3'- aUGCGCC-CGuCGAGGAGgagGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 129236 0.69 0.456158
Target:  5'- gGCGCGGGU-GCgCC-CCUCggugaCGCGGCg -3'
miRNA:   3'- aUGCGCCCGuCGaGGaGGAG-----GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 128757 0.67 0.569451
Target:  5'- --aGCGGGCgcauguaguaGGCguaCCg-CUCCACGGCc -3'
miRNA:   3'- augCGCCCG----------UCGa--GGagGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 127739 0.66 0.61892
Target:  5'- -uCGCGGGCGGgaaccggucaucCUCCUCCUCUuccuCGuCg -3'
miRNA:   3'- auGCGCCCGUC------------GAGGAGGAGGu---GCcG- -5'
29381 5' -61.8 NC_006151.1 + 127663 0.72 0.304636
Target:  5'- cACGCcgaucccGGGCGGgaaCUCCUCgUCgGCGGCg -3'
miRNA:   3'- aUGCG-------CCCGUC---GAGGAGgAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 124936 0.67 0.530584
Target:  5'- -uCGCGGGCccugGGCgCCUCCUUCGuCaGCg -3'
miRNA:   3'- auGCGCCCG----UCGaGGAGGAGGU-GcCG- -5'
29381 5' -61.8 NC_006151.1 + 123765 0.68 0.50208
Target:  5'- gGCGCGGGCcccgggggcaucGGC-CCgggCa-CCACGGCg -3'
miRNA:   3'- aUGCGCCCG------------UCGaGGa--GgaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 123077 0.71 0.333647
Target:  5'- aGCGCcGGCGGCgCCUguacgcggaccgCCUCuCGCGGCg -3'
miRNA:   3'- aUGCGcCCGUCGaGGA------------GGAG-GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 123036 0.76 0.17331
Target:  5'- gGCGUGGGCGGa-CCUgCCggCCGCGGCg -3'
miRNA:   3'- aUGCGCCCGUCgaGGA-GGa-GGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.