miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 97846 0.66 0.599057
Target:  5'- gUGCGCGcGCAGCgcgucgUCCgcgUUCUCgGCGGCc -3'
miRNA:   3'- -AUGCGCcCGUCG------AGG---AGGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 130329 0.66 0.599057
Target:  5'- cGCGCucGGGgAGCUCgCgcg-CCGCGGCg -3'
miRNA:   3'- aUGCG--CCCgUCGAG-GaggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 20587 0.66 0.599057
Target:  5'- gACGaCGGGcCGGCa-CUCgUCCGCGGa -3'
miRNA:   3'- aUGC-GCCC-GUCGagGAGgAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 95098 0.66 0.589156
Target:  5'- gACGCcguaGaGCAGCUCCUCggCgAUGGCg -3'
miRNA:   3'- aUGCGc---C-CGUCGAGGAGgaGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 96631 0.66 0.589156
Target:  5'- aGgGCGcGCAGCgCCUCgagCUCgGCGGCg -3'
miRNA:   3'- aUgCGCcCGUCGaGGAG---GAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 10203 0.66 0.589156
Target:  5'- gGCGCGGGCGGCggCUgCagagGCGGCu -3'
miRNA:   3'- aUGCGCCCGUCGagGAgGagg-UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 38623 0.66 0.589156
Target:  5'- gGCucucCGGcGCGGC-CCUCCgcggggacggCCACGGCc -3'
miRNA:   3'- aUGc---GCC-CGUCGaGGAGGa---------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 64253 0.66 0.589156
Target:  5'- gGCGCGGGCcacGCU-CUCgUUgaCGCGGCc -3'
miRNA:   3'- aUGCGCCCGu--CGAgGAGgAG--GUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 68263 0.66 0.589156
Target:  5'- cGCGCGGcgacggucGCGGCgCCgggcgCCACGGCg -3'
miRNA:   3'- aUGCGCC--------CGUCGaGGagga-GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 136156 0.66 0.589156
Target:  5'- gACGCuGGCcGCcuUCCggcgCCUCUACGGg -3'
miRNA:   3'- aUGCGcCCGuCG--AGGa---GGAGGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 141311 0.66 0.589156
Target:  5'- gUACGCGGGCGGgUCCgggauggucaCCgcguaCGCGGg -3'
miRNA:   3'- -AUGCGCCCGUCgAGGa---------GGag---GUGCCg -5'
29381 5' -61.8 NC_006151.1 + 11212 0.66 0.585204
Target:  5'- gGCGCGuccGGgaaGGCUUCUCCcgggccgcgagggCCGCGGCg -3'
miRNA:   3'- aUGCGC---CCg--UCGAGGAGGa------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 8296 0.67 0.579286
Target:  5'- cGCGCGGGCGccgcgucccGCcCCgagCCcCCGgGGCg -3'
miRNA:   3'- aUGCGCCCGU---------CGaGGa--GGaGGUgCCG- -5'
29381 5' -61.8 NC_006151.1 + 128757 0.67 0.569451
Target:  5'- --aGCGGGCgcauguaguaGGCguaCCg-CUCCACGGCc -3'
miRNA:   3'- augCGCCCG----------UCGa--GGagGAGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 83658 0.67 0.569451
Target:  5'- gACGaGGGCcGCgUCCUCCUCgCucaGGCu -3'
miRNA:   3'- aUGCgCCCGuCG-AGGAGGAG-Gug-CCG- -5'
29381 5' -61.8 NC_006151.1 + 137614 0.67 0.568469
Target:  5'- gGCGCGGGCggggaccccGGCgCCUCCgcccucgUCCGCgcccccgucccGGCg -3'
miRNA:   3'- aUGCGCCCG---------UCGaGGAGG-------AGGUG-----------CCG- -5'
29381 5' -61.8 NC_006151.1 + 97605 0.67 0.559658
Target:  5'- cACGCGGGCAcguGCaCCUgCga-GCGGCg -3'
miRNA:   3'- aUGCGCCCGU---CGaGGAgGaggUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 101711 0.67 0.559658
Target:  5'- --aGCGGGCGGUgcCCUCCgugcacCCgAUGGCc -3'
miRNA:   3'- augCGCCCGUCGa-GGAGGa-----GG-UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 9395 0.67 0.558681
Target:  5'- cGCGCGGGUcgGGCcuUCUUCC-CCAuccccgcCGGCc -3'
miRNA:   3'- aUGCGCCCG--UCG--AGGAGGaGGU-------GCCG- -5'
29381 5' -61.8 NC_006151.1 + 19304 0.67 0.553804
Target:  5'- gGCGCGGGCGGCcggucgCCcaccgCCacaaagaacacggcCCGCGGCc -3'
miRNA:   3'- aUGCGCCCGUCGa-----GGa----GGa-------------GGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.