miRNA display CGI


Results 61 - 80 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 92651 0.66 0.533856
Target:  5'- cGCCGGCaagGCGCUCGcccugcugcCGGCGGCcggggacgcgcgcucGCCGCg -3'
miRNA:   3'- -UGGCCG---CGCGGGCu--------GUCGUCG---------------UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 102975 0.66 0.530037
Target:  5'- -aCGGCGCGCugCUGGC-GCAGCugCu- -3'
miRNA:   3'- ugGCCGCGCG--GGCUGuCGUCGugGug -5'
29382 3' -63.2 NC_006151.1 + 49847 0.66 0.530037
Target:  5'- -gCGGCGgGCCCGcGCugggcGCAGCACg-- -3'
miRNA:   3'- ugGCCGCgCGGGC-UGu----CGUCGUGgug -5'
29382 3' -63.2 NC_006151.1 + 69419 0.66 0.530037
Target:  5'- aGCuCGuCGCGCCa---GGCGGCGCCGCc -3'
miRNA:   3'- -UG-GCcGCGCGGgcugUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 115789 0.66 0.530037
Target:  5'- uCgGGCGCGCUCGuCGGgAuGCGCgCGCg -3'
miRNA:   3'- uGgCCGCGCGGGCuGUCgU-CGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 121090 0.66 0.530037
Target:  5'- -gCGGCgGCGCCgGGCuGCAcgACCACu -3'
miRNA:   3'- ugGCCG-CGCGGgCUGuCGUcgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 58903 0.66 0.530037
Target:  5'- cCCGGcCGCGCacacgcgcucccCCGccGCGGCcgucauAGCGCCGCa -3'
miRNA:   3'- uGGCC-GCGCG------------GGC--UGUCG------UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 65454 0.66 0.530037
Target:  5'- aGCUGGCGCagcgGCgCCGAgAGUcccaucaggcGCACCACg -3'
miRNA:   3'- -UGGCCGCG----CG-GGCUgUCGu---------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 73597 0.66 0.530037
Target:  5'- aGCCGGgGUGCagCUGGCGccGCAGCuggugggugaagGCCACg -3'
miRNA:   3'- -UGGCCgCGCG--GGCUGU--CGUCG------------UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 95675 0.66 0.530037
Target:  5'- -aCGGCGCGCUCGcCGuccaGGUGCCGCu -3'
miRNA:   3'- ugGCCGCGCGGGCuGUcg--UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 117766 0.66 0.530037
Target:  5'- cGCCGGCcgagguauagGCuCCgGGCGG-GGCGCCACg -3'
miRNA:   3'- -UGGCCG----------CGcGGgCUGUCgUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 120750 0.66 0.530037
Target:  5'- cCCGGcCGCgucaugGCCUGGguGCGGCGCCn- -3'
miRNA:   3'- uGGCC-GCG------CGGGCUguCGUCGUGGug -5'
29382 3' -63.2 NC_006151.1 + 71046 0.66 0.529084
Target:  5'- cGCCGcGCGCGucgucgccgaCCCGGCcguGGUcuucuaccaccacGGCGCCGCg -3'
miRNA:   3'- -UGGC-CGCGC----------GGGCUG---UCG-------------UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 119962 0.66 0.52718
Target:  5'- uCgGGCGCgcuguGCCCGGCGacgagcuuccuggcGCGGCGCaCGCu -3'
miRNA:   3'- uGgCCGCG-----CGGGCUGU--------------CGUCGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 27087 0.66 0.52718
Target:  5'- gGCgCGGCGCagggcgcgcgugucGCCCGucacguCGGCGGCcgagacggcgauGCCGCg -3'
miRNA:   3'- -UG-GCCGCG--------------CGGGCu-----GUCGUCG------------UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 137744 0.66 0.52718
Target:  5'- gGCCGGCGCcgacacgguccgcgGCCUGGCGcGCGuGCuCCAg -3'
miRNA:   3'- -UGGCCGCG--------------CGGGCUGU-CGU-CGuGGUg -5'
29382 3' -63.2 NC_006151.1 + 104112 0.66 0.520535
Target:  5'- gGCCGaguucGUGCGCCugcgCGACguGGCGGCcgACCGCg -3'
miRNA:   3'- -UGGC-----CGCGCGG----GCUG--UCGUCG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 99929 0.66 0.520535
Target:  5'- -aCGGCGCcgGCCucauccccaaCGuCAGCGGCuACCGCa -3'
miRNA:   3'- ugGCCGCG--CGG----------GCuGUCGUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 81437 0.66 0.520535
Target:  5'- -gCGGCGCaGCgaGACGGC-GCACgGCg -3'
miRNA:   3'- ugGCCGCG-CGggCUGUCGuCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 137314 0.66 0.520535
Target:  5'- cGCCGcGCgGUGCUCGACGcGCucGCGCUGCu -3'
miRNA:   3'- -UGGC-CG-CGCGGGCUGU-CGu-CGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.