miRNA display CGI


Results 41 - 60 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 135904 0.66 0.549225
Target:  5'- cGCCGcCGCGacCCCGGCGGUcguGCGCgCGCu -3'
miRNA:   3'- -UGGCcGCGC--GGGCUGUCGu--CGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 57465 0.66 0.549225
Target:  5'- gGCCaGGUGcCGCgCCG-CGGCGGCcUCGCa -3'
miRNA:   3'- -UGG-CCGC-GCG-GGCuGUCGUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 58652 0.66 0.549225
Target:  5'- cGCCGGgaGgGCgCGGC-GCAGgGCCGCc -3'
miRNA:   3'- -UGGCCg-CgCGgGCUGuCGUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 103166 0.66 0.549225
Target:  5'- gACCuGGCGCGCuUCGAC-GCcauGGaCGCCGCc -3'
miRNA:   3'- -UGG-CCGCGCG-GGCUGuCG---UC-GUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 103335 0.66 0.549225
Target:  5'- cGCUGGUGCaGgCgGcGCAGCAGCgcGCCGCc -3'
miRNA:   3'- -UGGCCGCG-CgGgC-UGUCGUCG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 98202 0.66 0.539602
Target:  5'- cGCCGcGCGgGgUCGagugcGCGGCGGCGCCcGCg -3'
miRNA:   3'- -UGGC-CGCgCgGGC-----UGUCGUCGUGG-UG- -5'
29382 3' -63.2 NC_006151.1 + 70915 0.66 0.539602
Target:  5'- uGCCuGGCGCGCgugCUGGC-GCuGCACgACg -3'
miRNA:   3'- -UGG-CCGCGCG---GGCUGuCGuCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 68217 0.66 0.539602
Target:  5'- -gCGGCccuGCGCCaGGC-GCAGCGCCcGCg -3'
miRNA:   3'- ugGCCG---CGCGGgCUGuCGUCGUGG-UG- -5'
29382 3' -63.2 NC_006151.1 + 66545 0.66 0.539602
Target:  5'- uCgGGgGCGCgCG-CGGCcGCGCCGCc -3'
miRNA:   3'- uGgCCgCGCGgGCuGUCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 53680 0.66 0.539602
Target:  5'- aGCUGuaGCGCCCGA--GCuGCGCCuGCa -3'
miRNA:   3'- -UGGCcgCGCGGGCUguCGuCGUGG-UG- -5'
29382 3' -63.2 NC_006151.1 + 107721 0.66 0.539602
Target:  5'- gGCCGcCGCgGCCCccaaGCAGCAGCcCCGg -3'
miRNA:   3'- -UGGCcGCG-CGGGc---UGUCGUCGuGGUg -5'
29382 3' -63.2 NC_006151.1 + 136044 0.66 0.539602
Target:  5'- aGCaGGUGCGCCCGcgcacCGGCAaCGCCGa -3'
miRNA:   3'- -UGgCCGCGCGGGCu----GUCGUcGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 85246 0.66 0.539602
Target:  5'- aGCCaGGCGCuGgCCGAgGGCGggcgcaucucGUACCGCu -3'
miRNA:   3'- -UGG-CCGCG-CgGGCUgUCGU----------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 138695 0.66 0.539602
Target:  5'- -aCGGaCGCgcugaGCCCGGCGcuGC-GCGCCGCg -3'
miRNA:   3'- ugGCC-GCG-----CGGGCUGU--CGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 138631 0.66 0.539602
Target:  5'- cGCCgggGGCGCGCCgGACuGGgAGgccuucaaCGCCACg -3'
miRNA:   3'- -UGG---CCGCGCGGgCUG-UCgUC--------GUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 76896 0.66 0.539602
Target:  5'- cGCCuGCuGCGCCggCGAgAGCGGCauccggucccggGCCACg -3'
miRNA:   3'- -UGGcCG-CGCGG--GCUgUCGUCG------------UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 70645 0.66 0.539602
Target:  5'- gGCCGcGCgcgagGCGCCCGuccuCAcGC-GCGCCGCc -3'
miRNA:   3'- -UGGC-CG-----CGCGGGCu---GU-CGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 62276 0.66 0.538643
Target:  5'- cGCCGGCcuucugcGUGCUCGugGcCAGCGCgGCc -3'
miRNA:   3'- -UGGCCG-------CGCGGGCugUcGUCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 97180 0.66 0.538643
Target:  5'- cCCGGCgcacgacGCGCUCGACGGUgccgaGGCG-CACg -3'
miRNA:   3'- uGGCCG-------CGCGGGCUGUCG-----UCGUgGUG- -5'
29382 3' -63.2 NC_006151.1 + 90705 0.66 0.538643
Target:  5'- -gCGGaCGCGCCCGccccgcagGCGGCGGCgacggugGCgGCg -3'
miRNA:   3'- ugGCC-GCGCGGGC--------UGUCGUCG-------UGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.