miRNA display CGI


Results 41 - 60 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 18962 0.66 0.5589
Target:  5'- cACCGGU-C-CCCGAgCAGCGGgCugCACg -3'
miRNA:   3'- -UGGCCGcGcGGGCU-GUCGUC-GugGUG- -5'
29382 3' -63.2 NC_006151.1 + 19013 0.74 0.192324
Target:  5'- aGCCGcGCGCGCgCCGGCgaGGUgaAGCugCACg -3'
miRNA:   3'- -UGGC-CGCGCG-GGCUG--UCG--UCGugGUG- -5'
29382 3' -63.2 NC_006151.1 + 19876 0.69 0.388144
Target:  5'- cUCGGUggagaGCGCCagGGcCAGCAGCGCCAg -3'
miRNA:   3'- uGGCCG-----CGCGGg-CU-GUCGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 20110 0.71 0.266772
Target:  5'- gACgGGCGC-CCCGGCgacggggcuggggGGCGgGCGCCGCg -3'
miRNA:   3'- -UGgCCGCGcGGGCUG-------------UCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 20167 0.67 0.483242
Target:  5'- cGCCGGgcCGCGCCCGggucGCGGcCGGUAgaugcgauuCCGCg -3'
miRNA:   3'- -UGGCC--GCGCGGGC----UGUC-GUCGU---------GGUG- -5'
29382 3' -63.2 NC_006151.1 + 20301 0.68 0.42987
Target:  5'- cCCGG-GCGCCCGccguggcguugGCGGCGGCGagcaggaCGCg -3'
miRNA:   3'- uGGCCgCGCGGGC-----------UGUCGUCGUg------GUG- -5'
29382 3' -63.2 NC_006151.1 + 20629 0.67 0.465082
Target:  5'- gUgGGgGCGCCCccugGGCGGCACCAg -3'
miRNA:   3'- uGgCCgCGCGGGcug-UCGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 20750 0.76 0.13983
Target:  5'- aGCCGGCGCGCCUccaccGCGGCGGaCGCgCGCc -3'
miRNA:   3'- -UGGCCGCGCGGGc----UGUCGUC-GUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 20877 0.73 0.211661
Target:  5'- aGCaGGCGCGCuuGgggucgaggcGCAGCAGCuCCACg -3'
miRNA:   3'- -UGgCCGCGCGggC----------UGUCGUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 21308 0.67 0.501737
Target:  5'- cACCGaGCGguggcgcgagaCGCCCGGC-GCGGCGgggguCCGCg -3'
miRNA:   3'- -UGGC-CGC-----------GCGGGCUGuCGUCGU-----GGUG- -5'
29382 3' -63.2 NC_006151.1 + 21627 0.67 0.501737
Target:  5'- cGCgGGaGCGUCCGGCcguucuuGCGGUACCAg -3'
miRNA:   3'- -UGgCCgCGCGGGCUGu------CGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 21967 0.68 0.456136
Target:  5'- cAUCGGCGUgGUgCGGCgccGGCAGCGCC-Ca -3'
miRNA:   3'- -UGGCCGCG-CGgGCUG---UCGUCGUGGuG- -5'
29382 3' -63.2 NC_006151.1 + 22100 0.67 0.482326
Target:  5'- cGCCGGUGgGCCaccgccuCGuuCAGCAGCcgguCCACc -3'
miRNA:   3'- -UGGCCGCgCGG-------GCu-GUCGUCGu---GGUG- -5'
29382 3' -63.2 NC_006151.1 + 22314 0.68 0.404515
Target:  5'- cGCCGaGCGuCGUCCgGGCGacCAGCGCCGCc -3'
miRNA:   3'- -UGGC-CGC-GCGGG-CUGUc-GUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 23578 0.72 0.238163
Target:  5'- gGCCGGCGUcguacaGCCCgGGCuGCAGCACgAg -3'
miRNA:   3'- -UGGCCGCG------CGGG-CUGuCGUCGUGgUg -5'
29382 3' -63.2 NC_006151.1 + 23674 0.67 0.501737
Target:  5'- cGCCGGUGCacguCUCGACGGagGGCAUgGCg -3'
miRNA:   3'- -UGGCCGCGc---GGGCUGUCg-UCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 24498 0.71 0.273565
Target:  5'- cCCGGCGaGCCCGuaaaAGUugGGCGCCGCc -3'
miRNA:   3'- uGGCCGCgCGGGCug--UCG--UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 24889 0.68 0.447284
Target:  5'- gGCCGGCGgGCCacgaaGAC-GCGGCccuCCGa -3'
miRNA:   3'- -UGGCCGCgCGGg----CUGuCGUCGu--GGUg -5'
29382 3' -63.2 NC_006151.1 + 25342 0.66 0.568623
Target:  5'- gGCCGGCGUGCCgCGAUAuCA-CAUCGg -3'
miRNA:   3'- -UGGCCGCGCGG-GCUGUcGUcGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 25420 0.67 0.474119
Target:  5'- cGCCGccccacGCGCGCCCGucaucccuccccGCGGCcGC-CCGCc -3'
miRNA:   3'- -UGGC------CGCGCGGGC------------UGUCGuCGuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.