miRNA display CGI


Results 21 - 40 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 6266 0.68 0.444647
Target:  5'- gGCCGGaCGCgauGCCCucuuccucggccgcGGCGGCGGcCGCCAg -3'
miRNA:   3'- -UGGCC-GCG---CGGG--------------CUGUCGUC-GUGGUg -5'
29382 3' -63.2 NC_006151.1 + 7659 0.66 0.568623
Target:  5'- cGCuCGGCGCGCgcuCCGAgGGC-GCcCCAg -3'
miRNA:   3'- -UG-GCCGCGCG---GGCUgUCGuCGuGGUg -5'
29382 3' -63.2 NC_006151.1 + 8254 0.69 0.391384
Target:  5'- gGCCGGCGCGCCgGgacGCcccuccgggggaaagAGUguccccgcgcgGGCGCCGCg -3'
miRNA:   3'- -UGGCCGCGCGGgC---UG---------------UCG-----------UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 9041 0.71 0.306191
Target:  5'- cGCCGGgGCGCCCcGCGuGCuccgggGGCGCCGg -3'
miRNA:   3'- -UGGCCgCGCGGGcUGU-CG------UCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 10193 0.71 0.267384
Target:  5'- cGCCGGuCGCgGCgCgGGCGGCGGCugCAg -3'
miRNA:   3'- -UGGCC-GCG-CG-GgCUGUCGUCGugGUg -5'
29382 3' -63.2 NC_006151.1 + 10564 0.68 0.404515
Target:  5'- cGCCcaauGGCGCGgCCGGCucGGCGGC-CCGg -3'
miRNA:   3'- -UGG----CCGCGCgGGCUG--UCGUCGuGGUg -5'
29382 3' -63.2 NC_006151.1 + 10641 0.74 0.18638
Target:  5'- uGCCGGCGCggcauccccGCCCaGGCGGCGggggagcgcggagcGCGCCGCc -3'
miRNA:   3'- -UGGCCGCG---------CGGG-CUGUCGU--------------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 10905 0.67 0.501737
Target:  5'- uGCCGGCGCGgaCCGG-GGUcgGGC-CCACg -3'
miRNA:   3'- -UGGCCGCGCg-GGCUgUCG--UCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 11041 0.68 0.42987
Target:  5'- gGCCGGCcggGgGCCCGGCcuggacGCGG-GCCACa -3'
miRNA:   3'- -UGGCCG---CgCGGGCUGu-----CGUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 14073 0.67 0.474119
Target:  5'- -gCGGCcCGgCCGACGGCAcuCGCCGCc -3'
miRNA:   3'- ugGCCGcGCgGGCUGUCGUc-GUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 15084 0.77 0.108756
Target:  5'- cCUGGCGC-CCCGACAcGCGGCGCCuCg -3'
miRNA:   3'- uGGCCGCGcGGGCUGU-CGUCGUGGuG- -5'
29382 3' -63.2 NC_006151.1 + 15890 0.71 0.267384
Target:  5'- cGCCGggggacGCGCGcCCCGAC-GCGGCccGCCGCc -3'
miRNA:   3'- -UGGC------CGCGC-GGGCUGuCGUCG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 16920 0.66 0.565702
Target:  5'- cGCCGGCGCacgucGCCCcgggucacgaucugGGCAuGCAGgGCCuCg -3'
miRNA:   3'- -UGGCCGCG-----CGGG--------------CUGU-CGUCgUGGuG- -5'
29382 3' -63.2 NC_006151.1 + 17112 0.74 0.183248
Target:  5'- cGCCGGgG-GCuCCGGCGGCGGUGCUGCg -3'
miRNA:   3'- -UGGCCgCgCG-GGCUGUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 17405 0.69 0.396275
Target:  5'- cGCgUGGCGCGC--GGCAGCAGgGCCAg -3'
miRNA:   3'- -UG-GCCGCGCGggCUGUCGUCgUGGUg -5'
29382 3' -63.2 NC_006151.1 + 17433 0.69 0.356737
Target:  5'- aGCCgGGgGCGaucuCCGAgGagcGCAGCACCACg -3'
miRNA:   3'- -UGG-CCgCGCg---GGCUgU---CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 17492 0.77 0.111264
Target:  5'- -gCGGCGCGCCgcugcugcaccagCGACGcGUAGCACCACu -3'
miRNA:   3'- ugGCCGCGCGG-------------GCUGU-CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 17712 0.67 0.483242
Target:  5'- uGCUGuGUGCGCCCGGguGCgccggGGC-CCAUu -3'
miRNA:   3'- -UGGC-CGCGCGGGCUguCG-----UCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 17957 0.67 0.501737
Target:  5'- uCCGGCGCccGCCUGcCGGC-GUcCCACg -3'
miRNA:   3'- uGGCCGCG--CGGGCuGUCGuCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 18558 0.72 0.238163
Target:  5'- gGCCgcgaGGC-CGCCCGGCGGCGGgAgCACa -3'
miRNA:   3'- -UGG----CCGcGCGGGCUGUCGUCgUgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.