miRNA display CGI


Results 21 - 40 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 69880 0.77 0.117328
Target:  5'- aGCuCGcGCGCGCCC-ACGcGCAGCGCCGCc -3'
miRNA:   3'- -UG-GC-CGCGCGGGcUGU-CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 82141 0.77 0.12154
Target:  5'- cGCgGGCGgGCCCGGCGGCuccagguccgagccgAGCGCCGg -3'
miRNA:   3'- -UGgCCGCgCGGGCUGUCG---------------UCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 100100 0.77 0.123388
Target:  5'- cGCCGGCGcCGCCCucgcuGGCGGCcAGCGCCu- -3'
miRNA:   3'- -UGGCCGC-GCGGG-----CUGUCG-UCGUGGug -5'
29382 3' -63.2 NC_006151.1 + 118142 0.77 0.123388
Target:  5'- cGCCGaCGaCGCCgCGGCGGUGGCGCCGCu -3'
miRNA:   3'- -UGGCcGC-GCGG-GCUGUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 130288 0.77 0.123388
Target:  5'- cGCgGGCGCGCgccggCCGACGGCGcggagcgcgcGCGCCGCg -3'
miRNA:   3'- -UGgCCGCGCG-----GGCUGUCGU----------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 134695 0.76 0.126526
Target:  5'- cCCcGCGCGcCCCGAU-GCAGCACCGCc -3'
miRNA:   3'- uGGcCGCGC-GGGCUGuCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 2482 0.76 0.129738
Target:  5'- gGCCGcGCgGUGCCCGAaGGCGGCGCCcGCg -3'
miRNA:   3'- -UGGC-CG-CGCGGGCUgUCGUCGUGG-UG- -5'
29382 3' -63.2 NC_006151.1 + 136080 0.76 0.129738
Target:  5'- cGCCGGaGCGCCCGcugcgcuccaucGCGGUcgGGCGCCGCg -3'
miRNA:   3'- -UGGCCgCGCGGGC------------UGUCG--UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 99992 0.76 0.129738
Target:  5'- cGCUGGCGCGCgaggacCUGACGGUGGCGCaCGCg -3'
miRNA:   3'- -UGGCCGCGCG------GGCUGUCGUCGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 28869 0.76 0.136389
Target:  5'- gGCCGGCGCGucCCCGGaGGCGgGUGCCGCg -3'
miRNA:   3'- -UGGCCGCGC--GGGCUgUCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 68772 0.76 0.136389
Target:  5'- -gUGGCGCGCgCGGCgAGguGCGCCGCc -3'
miRNA:   3'- ugGCCGCGCGgGCUG-UCguCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 110181 0.76 0.136389
Target:  5'- cGCCGcGUGcCGCCUGAUAGC-GCGCCGCc -3'
miRNA:   3'- -UGGC-CGC-GCGGGCUGUCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 49588 0.76 0.136389
Target:  5'- cGCCGGCGC-CCCGGcCAGC-GCGCUGCc -3'
miRNA:   3'- -UGGCCGCGcGGGCU-GUCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 123007 0.76 0.136389
Target:  5'- cCCGGCGCGCCCccgcCGGCGGaCGCCGu -3'
miRNA:   3'- uGGCCGCGCGGGcu--GUCGUC-GUGGUg -5'
29382 3' -63.2 NC_006151.1 + 28588 0.76 0.136389
Target:  5'- gGCCGGCGCGucCCCGGaGGCGgGUGCCGCg -3'
miRNA:   3'- -UGGCCGCGC--GGGCUgUCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 20750 0.76 0.13983
Target:  5'- aGCCGGCGCGCCUccaccGCGGCGGaCGCgCGCc -3'
miRNA:   3'- -UGGCCGCGCGGGc----UGUCGUC-GUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 122927 0.76 0.143351
Target:  5'- -gCGGCGaCGacgcggacgCCGACGGCGGCGCCGCg -3'
miRNA:   3'- ugGCCGC-GCg--------GGCUGUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 130727 0.75 0.146953
Target:  5'- gGCCcGCGCgGCCgCGGC-GCAGCGCCACc -3'
miRNA:   3'- -UGGcCGCG-CGG-GCUGuCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 72047 0.75 0.146953
Target:  5'- cGCCGcGCaGCGUCuCGGCGGCGcGCGCCACc -3'
miRNA:   3'- -UGGC-CG-CGCGG-GCUGUCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 92171 0.75 0.149523
Target:  5'- gGCCGuGCGCG-CCGACGGCGacggggccgccgacGCGCCGCc -3'
miRNA:   3'- -UGGC-CGCGCgGGCUGUCGU--------------CGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.