miRNA display CGI


Results 21 - 40 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 112617 0.66 0.567649
Target:  5'- cGCUGGCGCuggacgaGCCCuGCcGCGuGUGCCGCa -3'
miRNA:   3'- -UGGCCGCG-------CGGGcUGuCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 62012 0.66 0.566675
Target:  5'- -aCGuGCGCGCCgcccUGGCGGCcagccccccgcuGCGCCGCg -3'
miRNA:   3'- ugGC-CGCGCGG----GCUGUCGu-----------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 16920 0.66 0.565702
Target:  5'- cGCCGGCGCacgucGCCCcgggucacgaucugGGCAuGCAGgGCCuCg -3'
miRNA:   3'- -UGGCCGCG-----CGGG--------------CUGU-CGUCgUGGuG- -5'
29382 3' -63.2 NC_006151.1 + 18962 0.66 0.5589
Target:  5'- cACCGGU-C-CCCGAgCAGCGGgCugCACg -3'
miRNA:   3'- -UGGCCGcGcGGGCU-GUCGUC-GugGUG- -5'
29382 3' -63.2 NC_006151.1 + 37259 0.66 0.5589
Target:  5'- cCCGGC-C-CCCGcGCAGgaAGCGCCGCu -3'
miRNA:   3'- uGGCCGcGcGGGC-UGUCg-UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 55430 0.66 0.5589
Target:  5'- cGCaGGCGgGCgCgGACGGgacCGGCGCCGCc -3'
miRNA:   3'- -UGgCCGCgCG-GgCUGUC---GUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 101905 0.66 0.5589
Target:  5'- gGCCGaGCaUGCCCa--AGCGGCGCCGg -3'
miRNA:   3'- -UGGC-CGcGCGGGcugUCGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 103286 0.66 0.5589
Target:  5'- aGCCaggagacGCGCGCgCGGCucgcGCGGCGCgACg -3'
miRNA:   3'- -UGGc------CGCGCGgGCUGu---CGUCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 117400 0.66 0.5589
Target:  5'- uGCCgcaGGCGCugaGCCC--CAGCAGCgugACCACc -3'
miRNA:   3'- -UGG---CCGCG---CGGGcuGUCGUCG---UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 90069 0.66 0.5589
Target:  5'- cUCGGUGCGCacguucaCGAgGGCccccgccGCGCCGCa -3'
miRNA:   3'- uGGCCGCGCGg------GCUgUCGu------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 116203 0.66 0.5589
Target:  5'- -aUGGCGCGCgCGagcgugauguugGCgAGCcGCGCCACg -3'
miRNA:   3'- ugGCCGCGCGgGC------------UG-UCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 128808 0.66 0.5589
Target:  5'- aGCgCGGCGCGCgUGGCcccguacGCGGCGCUc- -3'
miRNA:   3'- -UG-GCCGCGCGgGCUGu------CGUCGUGGug -5'
29382 3' -63.2 NC_006151.1 + 60685 0.66 0.557931
Target:  5'- cGCCGuccucccGCGCGCCCGcCGcGCc-CGCCGCg -3'
miRNA:   3'- -UGGC-------CGCGCGGGCuGU-CGucGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 87455 0.66 0.555993
Target:  5'- -gCGGcCGCcCCCGcuccggcuccagcaGCGGCAGCcGCCGCg -3'
miRNA:   3'- ugGCC-GCGcGGGC--------------UGUCGUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 5359 0.66 0.555993
Target:  5'- uCCGGCGCgGCgCCGGCggggcugucucugcGGgGGCGCCcCg -3'
miRNA:   3'- uGGCCGCG-CG-GGCUG--------------UCgUCGUGGuG- -5'
29382 3' -63.2 NC_006151.1 + 102619 0.66 0.549225
Target:  5'- aGCgGGCGCGCgaCGugAGC-GCGCUcgagGCg -3'
miRNA:   3'- -UGgCCGCGCGg-GCugUCGuCGUGG----UG- -5'
29382 3' -63.2 NC_006151.1 + 103166 0.66 0.549225
Target:  5'- gACCuGGCGCGCuUCGAC-GCcauGGaCGCCGCc -3'
miRNA:   3'- -UGG-CCGCGCG-GGCUGuCG---UC-GUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 58652 0.66 0.549225
Target:  5'- cGCCGGgaGgGCgCGGC-GCAGgGCCGCc -3'
miRNA:   3'- -UGGCCg-CgCGgGCUGuCGUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 57465 0.66 0.549225
Target:  5'- gGCCaGGUGcCGCgCCG-CGGCGGCcUCGCa -3'
miRNA:   3'- -UGG-CCGC-GCG-GGCuGUCGUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 135904 0.66 0.549225
Target:  5'- cGCCGcCGCGacCCCGGCGGUcguGCGCgCGCu -3'
miRNA:   3'- -UGGCcGCGC--GGGCUGUCGu--CGUG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.