miRNA display CGI


Results 1 - 20 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 132180 1.09 0.000579
Target:  5'- cACCGGCGCGCCCGACAGCAGCACCACg -3'
miRNA:   3'- -UGGCCGCGCGGGCUGUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 57729 0.85 0.028826
Target:  5'- gACCGcGCGCGCCCGcACGGC-GCGCCGCa -3'
miRNA:   3'- -UGGC-CGCGCGGGC-UGUCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 52368 0.85 0.030961
Target:  5'- cGCCGGCGCGCCCccggggcccgcgggGGCGGCGgGCGCCGCc -3'
miRNA:   3'- -UGGCCGCGCGGG--------------CUGUCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 36624 0.85 0.032044
Target:  5'- gGCCGGUcucgGCGCCCGGCGGCGGCGgCGCc -3'
miRNA:   3'- -UGGCCG----CGCGGGCUGUCGUCGUgGUG- -5'
29382 3' -63.2 NC_006151.1 + 142988 0.82 0.054215
Target:  5'- cGCgGGUGgGCCCGACcGCAGCAUCGCg -3'
miRNA:   3'- -UGgCCGCgCGGGCUGuCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 139265 0.8 0.07217
Target:  5'- cGCCcGCGCGCuCCGACGGCGgacGCGCCGCc -3'
miRNA:   3'- -UGGcCGCGCG-GGCUGUCGU---CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 38814 0.79 0.08644
Target:  5'- cACCc-CGCGCCCGACGGCGGCuuccGCCGCg -3'
miRNA:   3'- -UGGccGCGCGGGCUGUCGUCG----UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 50150 0.79 0.088686
Target:  5'- cCCGcGCGCGCCCGACGagcggacgagcGCGGCcgGCCGCg -3'
miRNA:   3'- uGGC-CGCGCGGGCUGU-----------CGUCG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 132435 0.78 0.090988
Target:  5'- -gCGGCGCGCCUGcGCGugcagguagcGCAGCACCGCg -3'
miRNA:   3'- ugGCCGCGCGGGC-UGU----------CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 38534 0.78 0.093347
Target:  5'- cGCCGGCccggacccaGCGCCCGAgCGGCgcaagaagaAGCGCCGCg -3'
miRNA:   3'- -UGGCCG---------CGCGGGCU-GUCG---------UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 64075 0.78 0.100774
Target:  5'- uGCCGGUGCGCggguCCaGCAGCAGC-CCGCa -3'
miRNA:   3'- -UGGCCGCGCG----GGcUGUCGUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 102689 0.78 0.100774
Target:  5'- cGCgGGgGCGCCCGGCgcgGGCGGCGCgGCc -3'
miRNA:   3'- -UGgCCgCGCGGGCUG---UCGUCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 2281 0.78 0.103371
Target:  5'- gGCCGGCgggGCGCCCG-CGGCGGCgACgGCg -3'
miRNA:   3'- -UGGCCG---CGCGGGCuGUCGUCG-UGgUG- -5'
29382 3' -63.2 NC_006151.1 + 119036 0.77 0.108756
Target:  5'- -gCGG-GCGCCaagGACGGCGGCGCCGCg -3'
miRNA:   3'- ugGCCgCGCGGg--CUGUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 15084 0.77 0.108756
Target:  5'- cCUGGCGC-CCCGACAcGCGGCGCCuCg -3'
miRNA:   3'- uGGCCGCGcGGGCUGU-CGUCGUGGuG- -5'
29382 3' -63.2 NC_006151.1 + 17492 0.77 0.111264
Target:  5'- -gCGGCGCGCCgcugcugcaccagCGACGcGUAGCACCACu -3'
miRNA:   3'- ugGCCGCGCGG-------------GCUGU-CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 57077 0.77 0.111546
Target:  5'- gGCCGGCGcCGCgCaGGCGcacGCAGCGCCGCg -3'
miRNA:   3'- -UGGCCGC-GCGgG-CUGU---CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 109120 0.77 0.114403
Target:  5'- cGCCGGCccGCGCCCGcCGGCcgGGCACCu- -3'
miRNA:   3'- -UGGCCG--CGCGGGCuGUCG--UCGUGGug -5'
29382 3' -63.2 NC_006151.1 + 2222 0.77 0.114403
Target:  5'- -aCGGCGCcCCCGGCGGCGGCGCgGa -3'
miRNA:   3'- ugGCCGCGcGGGCUGUCGUCGUGgUg -5'
29382 3' -63.2 NC_006151.1 + 90245 0.77 0.117032
Target:  5'- gGCUGGCcaGCGCCCagcccgcggcgaaGACGGCGGCGCCGa -3'
miRNA:   3'- -UGGCCG--CGCGGG-------------CUGUCGUCGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.