miRNA display CGI


Results 1 - 20 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 1805 0.66 0.549225
Target:  5'- gGCCGGggaggcagGCGCCgGGgaGGCaAGCGCCGCc -3'
miRNA:   3'- -UGGCCg-------CGCGGgCUg-UCG-UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 2222 0.77 0.114403
Target:  5'- -aCGGCGCcCCCGGCGGCGGCGCgGa -3'
miRNA:   3'- ugGCCGCGcGGGCUGUCGUCGUGgUg -5'
29382 3' -63.2 NC_006151.1 + 2281 0.78 0.103371
Target:  5'- gGCCGGCgggGCGCCCG-CGGCGGCgACgGCg -3'
miRNA:   3'- -UGGCCG---CGCGGGCuGUCGUCG-UGgUG- -5'
29382 3' -63.2 NC_006151.1 + 2338 0.71 0.28627
Target:  5'- cUCGGCGUcggGCUC--CAGCAGCGCCGCg -3'
miRNA:   3'- uGGCCGCG---CGGGcuGUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 2367 0.66 0.567649
Target:  5'- cGCagaaGGCGCGCaacucggCCGGCAGgcccuCGGgGCCGCg -3'
miRNA:   3'- -UGg---CCGCGCG-------GGCUGUC-----GUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 2482 0.76 0.129738
Target:  5'- gGCCGcGCgGUGCCCGAaGGCGGCGCCcGCg -3'
miRNA:   3'- -UGGC-CG-CGCGGGCUgUCGUCGUGG-UG- -5'
29382 3' -63.2 NC_006151.1 + 2591 0.71 0.28627
Target:  5'- cGCUGGCgguagGCGCgCGGCGGCAGCgggACCGg -3'
miRNA:   3'- -UGGCCG-----CGCGgGCUGUCGUCG---UGGUg -5'
29382 3' -63.2 NC_006151.1 + 2961 0.67 0.465082
Target:  5'- cGCCGGCGaagccgagguccCGCgCCGAgAGCagAGCACCc- -3'
miRNA:   3'- -UGGCCGC------------GCG-GGCUgUCG--UCGUGGug -5'
29382 3' -63.2 NC_006151.1 + 3239 0.68 0.455247
Target:  5'- uCCaGGCG-GCgCGGCGGCggagcggGGCGCCGCg -3'
miRNA:   3'- uGG-CCGCgCGgGCUGUCG-------UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 3684 0.67 0.49245
Target:  5'- -gCGGCGgGCCCcgGGCGcGCGGCGCUu- -3'
miRNA:   3'- ugGCCGCgCGGG--CUGU-CGUCGUGGug -5'
29382 3' -63.2 NC_006151.1 + 3863 0.68 0.42987
Target:  5'- gGCCGGaggggGCGCCCGccGCcGcCGGCGCCGg -3'
miRNA:   3'- -UGGCCg----CGCGGGC--UGuC-GUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 3941 0.67 0.465082
Target:  5'- gGCCgGGCGCgggcuccgcggGCCCGggccgcGCGGCGGCcucggcgagccgGCCGCg -3'
miRNA:   3'- -UGG-CCGCG-----------CGGGC------UGUCGUCG------------UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 4048 0.72 0.240399
Target:  5'- cGCgGGCGCGggcCCCGuccacgcuguagcgcAcCAGCGGCGCCACg -3'
miRNA:   3'- -UGgCCGCGC---GGGC---------------U-GUCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 4201 0.7 0.320053
Target:  5'- gGCaGGCGgGCCCGAgGGCGGCcggGgCGCg -3'
miRNA:   3'- -UGgCCGCgCGGGCUgUCGUCG---UgGUG- -5'
29382 3' -63.2 NC_006151.1 + 4327 0.66 0.568623
Target:  5'- gGCCGG-GCuGCgCGGCGGCgaaGGCGgCGCg -3'
miRNA:   3'- -UGGCCgCG-CGgGCUGUCG---UCGUgGUG- -5'
29382 3' -63.2 NC_006151.1 + 4430 0.68 0.421314
Target:  5'- gUCGGCGUagGCCCGGCGGaGGCuCUGCa -3'
miRNA:   3'- uGGCCGCG--CGGGCUGUCgUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 4778 0.68 0.456136
Target:  5'- gACgGGCacGgGCCCGGCcGCGGCgcgguagcggGCCGCg -3'
miRNA:   3'- -UGgCCG--CgCGGGCUGuCGUCG----------UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 5122 0.69 0.396275
Target:  5'- cCCGGCGCGggCGAguGgGGCGCCGg -3'
miRNA:   3'- uGGCCGCGCggGCUguCgUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 5233 0.7 0.349169
Target:  5'- gGCCGaGCGcCGCgCGGCGGCGGCggggGCC-Cg -3'
miRNA:   3'- -UGGC-CGC-GCGgGCUGUCGUCG----UGGuG- -5'
29382 3' -63.2 NC_006151.1 + 5359 0.66 0.555993
Target:  5'- uCCGGCGCgGCgCCGGCggggcugucucugcGGgGGCGCCcCg -3'
miRNA:   3'- uGGCCGCG-CG-GGCUG--------------UCgUCGUGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.