miRNA display CGI


Results 1 - 20 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 142988 0.82 0.054215
Target:  5'- cGCgGGUGgGCCCGACcGCAGCAUCGCg -3'
miRNA:   3'- -UGgCCGCgCGGGCUGuCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 142913 0.7 0.341716
Target:  5'- cACCGGCGCGggcaCCGACAcCGucccCACCACa -3'
miRNA:   3'- -UGGCCGCGCg---GGCUGUcGUc---GUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 142326 0.68 0.447284
Target:  5'- gGCCcGCGCGCUCG-CGGC-GC-CCGCu -3'
miRNA:   3'- -UGGcCGCGCGGGCuGUCGuCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 142005 0.67 0.465082
Target:  5'- aGCgCGGCGUGgggCGGguGUGGCACCACg -3'
miRNA:   3'- -UG-GCCGCGCgg-GCUguCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 141825 0.71 0.299435
Target:  5'- gGCCGGUucgggggucccGCGCUCGACgcgaggGGCucGCGCCGCg -3'
miRNA:   3'- -UGGCCG-----------CGCGGGCUG------UCGu-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 141403 0.67 0.5111
Target:  5'- -gCGGCGUGUCCGGCGaucggugcgggcGCGGC-CCGg -3'
miRNA:   3'- ugGCCGCGCGGGCUGU------------CGUCGuGGUg -5'
29382 3' -63.2 NC_006151.1 + 141213 0.71 0.28627
Target:  5'- cACUGGCugaagGgGCCCagcagcGACGGCuGCACCACg -3'
miRNA:   3'- -UGGCCG-----CgCGGG------CUGUCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 140299 0.69 0.372215
Target:  5'- cGCCGGCGcCGCCUG-CGGgAcguGCGCUGCa -3'
miRNA:   3'- -UGGCCGC-GCGGGCuGUCgU---CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 139872 0.67 0.496155
Target:  5'- cUCGGCGCggcacgaccucucccGCCCcguguucaacGACGGCuuccGCGCCGCg -3'
miRNA:   3'- uGGCCGCG---------------CGGG----------CUGUCGu---CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 139661 0.74 0.185032
Target:  5'- gGCgGGCGCGCCgcccgacaggcccugCGGCAGCGGCGgCgGCa -3'
miRNA:   3'- -UGgCCGCGCGG---------------GCUGUCGUCGU-GgUG- -5'
29382 3' -63.2 NC_006151.1 + 139265 0.8 0.07217
Target:  5'- cGCCcGCGCGCuCCGACGGCGgacGCGCCGCc -3'
miRNA:   3'- -UGGcCGCGCG-GGCUGUCGU---CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 138695 0.66 0.539602
Target:  5'- -aCGGaCGCgcugaGCCCGGCGcuGC-GCGCCGCg -3'
miRNA:   3'- ugGCC-GCG-----CGGGCUGU--CGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 138631 0.66 0.539602
Target:  5'- cGCCgggGGCGCGCCgGACuGGgAGgccuucaaCGCCACg -3'
miRNA:   3'- -UGG---CCGCGCGGgCUG-UCgUC--------GUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 138327 0.74 0.192324
Target:  5'- uGCCuGCGgGCCCGGCAcgcgcGCAGC-CCGCc -3'
miRNA:   3'- -UGGcCGCgCGGGCUGU-----CGUCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 138186 0.68 0.421314
Target:  5'- -gUGGCcaugGCGCCCGuGCuGCGGCACCuCg -3'
miRNA:   3'- ugGCCG----CGCGGGC-UGuCGUCGUGGuG- -5'
29382 3' -63.2 NC_006151.1 + 138100 0.66 0.520535
Target:  5'- cCCGGCGCacGCCgcUGGCGGaCAuGCugCGCg -3'
miRNA:   3'- uGGCCGCG--CGG--GCUGUC-GU-CGugGUG- -5'
29382 3' -63.2 NC_006151.1 + 137874 0.68 0.459704
Target:  5'- cACgGGCGCagccugcggcuGCCCuucuucgccaaggucGACGGCGGCggcuGCCACg -3'
miRNA:   3'- -UGgCCGCG-----------CGGG---------------CUGUCGUCG----UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 137744 0.66 0.52718
Target:  5'- gGCCGGCGCcgacacgguccgcgGCCUGGCGcGCGuGCuCCAg -3'
miRNA:   3'- -UGGCCGCG--------------CGGGCUGU-CGU-CGuGGUg -5'
29382 3' -63.2 NC_006151.1 + 137661 0.72 0.232649
Target:  5'- cCCGGCggacgaGCGCCCGcCGuGCGGCuGCCGCg -3'
miRNA:   3'- uGGCCG------CGCGGGCuGU-CGUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 137314 0.66 0.520535
Target:  5'- cGCCGcGCgGUGCUCGACGcGCucGCGCUGCu -3'
miRNA:   3'- -UGGC-CG-CGCGGGCUGU-CGu-CGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.