miRNA display CGI


Results 21 - 40 of 516 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 137174 0.67 0.465082
Target:  5'- aGCCGGCgGCGCagauguaCGugAGC--CGCCACg -3'
miRNA:   3'- -UGGCCG-CGCGg------GCugUCGucGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 137134 0.72 0.249518
Target:  5'- -aCGGCGCGgCgCGAC-GCGGCGCCGg -3'
miRNA:   3'- ugGCCGCGCgG-GCUGuCGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 137036 0.72 0.249518
Target:  5'- uGCCGGaCGCGugcccCCCGGCGccGguGUACCGCg -3'
miRNA:   3'- -UGGCC-GCGC-----GGGCUGU--CguCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 136980 0.75 0.158259
Target:  5'- gGCCGcCGCGCCgGGCGGCGgGCGCgCGCg -3'
miRNA:   3'- -UGGCcGCGCGGgCUGUCGU-CGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 136937 0.72 0.237607
Target:  5'- aGCCGG-GCG-CCGACGGCGccguccuGCGCCGCc -3'
miRNA:   3'- -UGGCCgCGCgGGCUGUCGU-------CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 136417 0.68 0.412862
Target:  5'- cGCgCGGgGC-CCCG-CGGCGGCGCaCGCc -3'
miRNA:   3'- -UG-GCCgCGcGGGCuGUCGUCGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 136080 0.76 0.129738
Target:  5'- cGCCGGaGCGCCCGcugcgcuccaucGCGGUcgGGCGCCGCg -3'
miRNA:   3'- -UGGCCgCGCGGGC------------UGUCG--UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 136044 0.66 0.539602
Target:  5'- aGCaGGUGCGCCCGcgcacCGGCAaCGCCGa -3'
miRNA:   3'- -UGgCCGCGCGGGCu----GUCGUcGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 135904 0.66 0.549225
Target:  5'- cGCCGcCGCGacCCCGGCGGUcguGCGCgCGCu -3'
miRNA:   3'- -UGGCcGCGC--GGGCUGUCGu--CGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 135801 0.66 0.520535
Target:  5'- uGCCGGgcgaGCGCgCCGAggccgagcuuuUAGC-GCGCCGCc -3'
miRNA:   3'- -UGGCCg---CGCG-GGCU-----------GUCGuCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 135360 0.67 0.49245
Target:  5'- aGCCGcCGCGCgUUGGCcGCGuGCGCCGCg -3'
miRNA:   3'- -UGGCcGCGCG-GGCUGuCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 135161 0.69 0.388144
Target:  5'- gGCgGGCGCgGCCCgGACGGgcgcCGGCuGCCGCc -3'
miRNA:   3'- -UGgCCGCG-CGGG-CUGUC----GUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 135008 0.68 0.412862
Target:  5'- gGCgGGgGCGCgggggGGCAGCAGCgggGCCGCg -3'
miRNA:   3'- -UGgCCgCGCGgg---CUGUCGUCG---UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 134805 0.67 0.49245
Target:  5'- -gCGGCG-GCCCgcgccggacccgGACGGUGGCgACCGCg -3'
miRNA:   3'- ugGCCGCgCGGG------------CUGUCGUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 134695 0.76 0.126526
Target:  5'- cCCcGCGCGcCCCGAU-GCAGCACCGCc -3'
miRNA:   3'- uGGcCGCGC-GGGCUGuCGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 134461 0.67 0.501737
Target:  5'- uACCGGUGCa-CCGcACGGaCGGCcGCCACu -3'
miRNA:   3'- -UGGCCGCGcgGGC-UGUC-GUCG-UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 134422 0.68 0.404515
Target:  5'- aGCUGGUGCuGCCCccCGGgGGCGCCGa -3'
miRNA:   3'- -UGGCCGCG-CGGGcuGUCgUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 133669 0.68 0.404515
Target:  5'- uGCCGGCGCGgcggcgcgccCCCGAggcggucucguCGGCGGCgACC-Cg -3'
miRNA:   3'- -UGGCCGCGC----------GGGCU-----------GUCGUCG-UGGuG- -5'
29382 3' -63.2 NC_006151.1 + 133330 0.72 0.232649
Target:  5'- --aGGCGCGCCgGGCGGCcGGUuCCGCg -3'
miRNA:   3'- uggCCGCGCGGgCUGUCG-UCGuGGUG- -5'
29382 3' -63.2 NC_006151.1 + 133258 0.68 0.404515
Target:  5'- cGCaCGGCcugucgcugaagGCGagCCGGCGGCGGC-CCACg -3'
miRNA:   3'- -UG-GCCG------------CGCg-GGCUGUCGUCGuGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.