miRNA display CGI


Results 41 - 60 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 3' -63.2 NC_006151.1 + 72729 0.75 0.150637
Target:  5'- gGCCccgaGGgGCGUCCG-CAGCAGCGCCGa -3'
miRNA:   3'- -UGG----CCgCGCGGGCuGUCGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 38129 0.75 0.150637
Target:  5'- gGCCGGCcCGgCCGAgCGGCGGCagGCCGCg -3'
miRNA:   3'- -UGGCCGcGCgGGCU-GUCGUCG--UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 37391 0.75 0.154405
Target:  5'- -aCGGcCGCGUCCGcuACGGCGGCGCCGg -3'
miRNA:   3'- ugGCC-GCGCGGGC--UGUCGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 103535 0.75 0.154405
Target:  5'- cCCGGCGCGCUgGugGGCgccgGGCAgCCGCu -3'
miRNA:   3'- uGGCCGCGCGGgCugUCG----UCGU-GGUG- -5'
29382 3' -63.2 NC_006151.1 + 130420 0.75 0.154405
Target:  5'- cGCgGGCGCGCcgaCCGucgaggacuGCAGCGGCGCCAg -3'
miRNA:   3'- -UGgCCGCGCG---GGC---------UGUCGUCGUGGUg -5'
29382 3' -63.2 NC_006151.1 + 52754 0.75 0.158259
Target:  5'- -gCGcGCGCGCCUcGCAgcGCAGCGCCGCg -3'
miRNA:   3'- ugGC-CGCGCGGGcUGU--CGUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 54620 0.75 0.158259
Target:  5'- cGCCgGGCGCGCCCcggggggaagcGGCGGCgcgAGCGCUGCg -3'
miRNA:   3'- -UGG-CCGCGCGGG-----------CUGUCG---UCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 106699 0.75 0.158259
Target:  5'- cGCCGGCgaccuguacGCGCCCGugGGCacgGGCAUgACg -3'
miRNA:   3'- -UGGCCG---------CGCGGGCugUCG---UCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 83358 0.75 0.158259
Target:  5'- cCCGGCGCGCgCGcggGCGcGCAgGCGCCGCa -3'
miRNA:   3'- uGGCCGCGCGgGC---UGU-CGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 136980 0.75 0.158259
Target:  5'- gGCCGcCGCGCCgGGCGGCGgGCGCgCGCg -3'
miRNA:   3'- -UGGCcGCGCGGgCUGUCGU-CGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 81607 0.75 0.162198
Target:  5'- cGCCGGCGCGCa--GCAGCAGgGCgACg -3'
miRNA:   3'- -UGGCCGCGCGggcUGUCGUCgUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 97305 0.75 0.166226
Target:  5'- aGCCGGCcCGUCgGGCAGCGcGCGCUGCg -3'
miRNA:   3'- -UGGCCGcGCGGgCUGUCGU-CGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 132038 0.75 0.166226
Target:  5'- aGCCGGCG-GCgCG-CGGCAGCGCgGCg -3'
miRNA:   3'- -UGGCCGCgCGgGCuGUCGUCGUGgUG- -5'
29382 3' -63.2 NC_006151.1 + 64229 0.74 0.170344
Target:  5'- cUCGGCGUacaggGCCgCGACGGCGGCgcggGCCACg -3'
miRNA:   3'- uGGCCGCG-----CGG-GCUGUCGUCG----UGGUG- -5'
29382 3' -63.2 NC_006151.1 + 68282 0.74 0.170344
Target:  5'- cGCCGG-GCGCCaCGGCGGCcaGGCGCgCGCc -3'
miRNA:   3'- -UGGCCgCGCGG-GCUGUCG--UCGUG-GUG- -5'
29382 3' -63.2 NC_006151.1 + 30247 0.74 0.17328
Target:  5'- cGCCGGCgggagagacgacggGCGCCacaGACAGCGGCGCgGg -3'
miRNA:   3'- -UGGCCG--------------CGCGGg--CUGUCGUCGUGgUg -5'
29382 3' -63.2 NC_006151.1 + 103676 0.74 0.174552
Target:  5'- -gCGGCGCGCgCGGCGGgGGUGCUGCg -3'
miRNA:   3'- ugGCCGCGCGgGCUGUCgUCGUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 122393 0.74 0.174552
Target:  5'- cGCgGGCGCGCgCUGGCGGCGcuCGCCGCc -3'
miRNA:   3'- -UGgCCGCGCG-GGCUGUCGUc-GUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 119071 0.74 0.174552
Target:  5'- cGCgGGCGCGCCCGuCucGCAG-GCCGCg -3'
miRNA:   3'- -UGgCCGCGCGGGCuGu-CGUCgUGGUG- -5'
29382 3' -63.2 NC_006151.1 + 104571 0.74 0.177553
Target:  5'- cGCgCGGCGCGCggacgugcugcaggCCGGCGGCAGcCGCgGCg -3'
miRNA:   3'- -UG-GCCGCGCG--------------GGCUGUCGUC-GUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.