Results 41 - 60 of 516 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29382 | 3' | -63.2 | NC_006151.1 | + | 63746 | 0.66 | 0.568623 |
Target: 5'- uCCGGCGCG-UCGGCGGggcguccuCGGCGCCcccGCg -3' miRNA: 3'- uGGCCGCGCgGGCUGUC--------GUCGUGG---UG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 67943 | 0.66 | 0.568623 |
Target: 5'- gGCC-GCGCGCCCaccacgcgccGGgGGcCAGgACCACg -3' miRNA: 3'- -UGGcCGCGCGGG----------CUgUC-GUCgUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 94041 | 0.66 | 0.568623 |
Target: 5'- cGCUcGCGCGCC--GCGGCGuCGCCGCg -3' miRNA: 3'- -UGGcCGCGCGGgcUGUCGUcGUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 113094 | 0.66 | 0.568623 |
Target: 5'- cGCCGcCGC-CaCCGGgGGCGGgGCCGCg -3' miRNA: 3'- -UGGCcGCGcG-GGCUgUCGUCgUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 4327 | 0.66 | 0.568623 |
Target: 5'- gGCCGG-GCuGCgCGGCGGCgaaGGCGgCGCg -3' miRNA: 3'- -UGGCCgCG-CGgGCUGUCG---UCGUgGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 69055 | 0.66 | 0.568623 |
Target: 5'- gACCGGCaGCGgcggcuccucguCCCc-CAGCGGCACgGCc -3' miRNA: 3'- -UGGCCG-CGC------------GGGcuGUCGUCGUGgUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 67839 | 0.66 | 0.568623 |
Target: 5'- cGCgGGgGCucagcaGCCCGGCgAGcCGGCGCCGa -3' miRNA: 3'- -UGgCCgCG------CGGGCUG-UC-GUCGUGGUg -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 101905 | 0.66 | 0.5589 |
Target: 5'- gGCCGaGCaUGCCCa--AGCGGCGCCGg -3' miRNA: 3'- -UGGC-CGcGCGGGcugUCGUCGUGGUg -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 103286 | 0.66 | 0.5589 |
Target: 5'- aGCCaggagacGCGCGCgCGGCucgcGCGGCGCgACg -3' miRNA: 3'- -UGGc------CGCGCGgGCUGu---CGUCGUGgUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 117400 | 0.66 | 0.5589 |
Target: 5'- uGCCgcaGGCGCugaGCCC--CAGCAGCgugACCACc -3' miRNA: 3'- -UGG---CCGCG---CGGGcuGUCGUCG---UGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 90069 | 0.66 | 0.5589 |
Target: 5'- cUCGGUGCGCacguucaCGAgGGCccccgccGCGCCGCa -3' miRNA: 3'- uGGCCGCGCGg------GCUgUCGu------CGUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 116203 | 0.66 | 0.5589 |
Target: 5'- -aUGGCGCGCgCGagcgugauguugGCgAGCcGCGCCACg -3' miRNA: 3'- ugGCCGCGCGgGC------------UG-UCGuCGUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 128808 | 0.66 | 0.5589 |
Target: 5'- aGCgCGGCGCGCgUGGCcccguacGCGGCGCUc- -3' miRNA: 3'- -UG-GCCGCGCGgGCUGu------CGUCGUGGug -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 16920 | 0.66 | 0.565702 |
Target: 5'- cGCCGGCGCacgucGCCCcgggucacgaucugGGCAuGCAGgGCCuCg -3' miRNA: 3'- -UGGCCGCG-----CGGG--------------CUGU-CGUCgUGGuG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 62012 | 0.66 | 0.566675 |
Target: 5'- -aCGuGCGCGCCgcccUGGCGGCcagccccccgcuGCGCCGCg -3' miRNA: 3'- ugGC-CGCGCGG----GCUGUCGu-----------CGUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 2367 | 0.66 | 0.567649 |
Target: 5'- cGCagaaGGCGCGCaacucggCCGGCAGgcccuCGGgGCCGCg -3' miRNA: 3'- -UGg---CCGCGCG-------GGCUGUC-----GUCgUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 101389 | 0.66 | 0.567649 |
Target: 5'- -aCGGCGCGCgccuucuUCGACGGCcucugGGCGCaGCg -3' miRNA: 3'- ugGCCGCGCG-------GGCUGUCG-----UCGUGgUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 112617 | 0.66 | 0.567649 |
Target: 5'- cGCUGGCGCuggacgaGCCCuGCcGCGuGUGCCGCa -3' miRNA: 3'- -UGGCCGCG-------CGGGcUGuCGU-CGUGGUG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 62504 | 0.66 | 0.568623 |
Target: 5'- --aGGCGCggacgacgGCCCGGCGGUaccugcagaAGCGCCuGCa -3' miRNA: 3'- uggCCGCG--------CGGGCUGUCG---------UCGUGG-UG- -5' |
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29382 | 3' | -63.2 | NC_006151.1 | + | 57498 | 0.66 | 0.568623 |
Target: 5'- gACgCGcacGCGCucgGCCgCGGCGGCGGCgGCCGCc -3' miRNA: 3'- -UG-GC---CGCG---CGG-GCUGUCGUCG-UGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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