Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29382 | 5' | -56.5 | NC_006151.1 | + | 136983 | 0.66 | 0.881134 |
Target: 5'- -cGCcGCGCCGGGcGGc--GGGCGCGc -3' miRNA: 3'- cuUGuCGUGGCCCaCCuucUCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 37407 | 0.66 | 0.881134 |
Target: 5'- cGGCGGCGCCGGGgacucccgcGAGGGGCucugggACGa -3' miRNA: 3'- cUUGUCGUGGCCCacc------UUCUCCG------UGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 22265 | 0.66 | 0.888093 |
Target: 5'- ---gGGUACgCGGGcgGGggGAaggucGGCGCGg -3' miRNA: 3'- cuugUCGUG-GCCCa-CCuuCU-----CCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 67659 | 0.66 | 0.888093 |
Target: 5'- gGAACAGCACgc---GGAAGAGGCcCGa -3' miRNA: 3'- -CUUGUCGUGgcccaCCUUCUCCGuGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 81722 | 0.66 | 0.888093 |
Target: 5'- ---gGGCGCCGGGUccucgccgaaGGuccAGGcGGCGCGg -3' miRNA: 3'- cuugUCGUGGCCCA----------CCu--UCU-CCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 8216 | 0.66 | 0.871017 |
Target: 5'- cGAAgAGgGCCGGGUccccuucccggcggGGAGGGccgggccGGCGCGc -3' miRNA: 3'- -CUUgUCgUGGCCCA--------------CCUUCU-------CCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 121091 | 0.66 | 0.869537 |
Target: 5'- cGGCGGCGCCGGGcUGcacgaccacucgcucGggGAG-CACGu -3' miRNA: 3'- cUUGUCGUGGCCC-AC---------------CuuCUCcGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 96715 | 0.67 | 0.843097 |
Target: 5'- gGGGCGGCGgCGGacgaGGAGGcggcGGGCGCGa -3' miRNA: 3'- -CUUGUCGUgGCCca--CCUUC----UCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 111258 | 0.67 | 0.843097 |
Target: 5'- cAGCAGCgagGCCGGGaaccgcgcgGGcGGGGGGUACGc -3' miRNA: 3'- cUUGUCG---UGGCCCa--------CC-UUCUCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 48134 | 0.67 | 0.843097 |
Target: 5'- cGGCGGCGCUGGG-GGuuccuGGCACc -3' miRNA: 3'- cUUGUCGUGGCCCaCCuucu-CCGUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 128235 | 0.66 | 0.848732 |
Target: 5'- cGugGGCGCCaggucgccgaucagGuGGUGGAAGcGGCACu -3' miRNA: 3'- cUugUCGUGG--------------C-CCACCUUCuCCGUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 34606 | 0.66 | 0.850324 |
Target: 5'- gGAGCGcGCGCCgagcgcgaggcgcGGGUGGGgcgaccgcGGGGGuCGCGg -3' miRNA: 3'- -CUUGU-CGUGG-------------CCCACCU--------UCUCC-GUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 97366 | 0.66 | 0.851117 |
Target: 5'- cGGCGGCGgCGGGcgcGGcGGGGGCGuCGg -3' miRNA: 3'- cUUGUCGUgGCCCa--CCuUCUCCGU-GC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 73861 | 0.66 | 0.858937 |
Target: 5'- ---gGGCGCCGGGUaGAAGaAGGCccccuCGa -3' miRNA: 3'- cuugUCGUGGCCCAcCUUC-UCCGu----GC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 30812 | 0.66 | 0.858937 |
Target: 5'- cGGgGGCACgCGGGcgGGAGGAGuuGCGu -3' miRNA: 3'- cUUgUCGUG-GCCCa-CCUUCUCcgUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 11734 | 0.66 | 0.866551 |
Target: 5'- gGAGCGGgGgUGaGG-GGGAGGGGUGCGg -3' miRNA: 3'- -CUUGUCgUgGC-CCaCCUUCUCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 33244 | 0.66 | 0.866551 |
Target: 5'- gGAGgGGguCCGGG-GGAAGGguGGgGCGg -3' miRNA: 3'- -CUUgUCguGGCCCaCCUUCU--CCgUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 137053 | 0.66 | 0.866551 |
Target: 5'- --cCGGCGCCGGuguaccgcGUGGAGcuGGCGCa -3' miRNA: 3'- cuuGUCGUGGCC--------CACCUUcuCCGUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 3887 | 0.66 | 0.866551 |
Target: 5'- --cCGGCGCCGGcGcUGGGAcgacGAGGC-CGg -3' miRNA: 3'- cuuGUCGUGGCC-C-ACCUU----CUCCGuGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 132764 | 0.66 | 0.869537 |
Target: 5'- cAGCAGCGCCGGGcccucgucGAAggccaggucgcugauGAGGCGCu -3' miRNA: 3'- cUUGUCGUGGCCCac------CUU---------------CUCCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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