miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 31641 0.69 0.733109
Target:  5'- cGAGCgcacgcgGGCGCgCGGGgagGGAGGAGG-GCGg -3'
miRNA:   3'- -CUUG-------UCGUG-GCCCa--CCUUCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 31713 0.73 0.501781
Target:  5'- ---gGGCGCCGGGcGGAacggggcguggAGAGGCGCc -3'
miRNA:   3'- cuugUCGUGGCCCaCCU-----------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 32121 0.66 0.881134
Target:  5'- aGAGgGGgACgGGG-GGAgagagagcgAGGGGCGCGa -3'
miRNA:   3'- -CUUgUCgUGgCCCaCCU---------UCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 32570 0.67 0.826485
Target:  5'- cGGGCAcccGCgGCCGGGcGGAGGGGGaaGCGg -3'
miRNA:   3'- -CUUGU---CG-UGGCCCaCCUUCUCCg-UGC- -5'
29382 5' -56.5 NC_006151.1 + 33244 0.66 0.866551
Target:  5'- gGAGgGGguCCGGG-GGAAGGguGGgGCGg -3'
miRNA:   3'- -CUUgUCguGGCCCaCCUUCU--CCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 34606 0.66 0.850324
Target:  5'- gGAGCGcGCGCCgagcgcgaggcgcGGGUGGGgcgaccgcGGGGGuCGCGg -3'
miRNA:   3'- -CUUGU-CGUGG-------------CCCACCU--------UCUCC-GUGC- -5'
29382 5' -56.5 NC_006151.1 + 36574 0.67 0.80916
Target:  5'- -cGCAGCGCCGGcacGGcGGGGGCcCGc -3'
miRNA:   3'- cuUGUCGUGGCCca-CCuUCUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 37407 0.66 0.881134
Target:  5'- cGGCGGCGCCGGGgacucccgcGAGGGGCucugggACGa -3'
miRNA:   3'- cUUGUCGUGGCCCacc------UUCUCCG------UGC- -5'
29382 5' -56.5 NC_006151.1 + 44396 0.77 0.29978
Target:  5'- cGGgGGCGCCGaGGaGGGAGGGGCGCGu -3'
miRNA:   3'- cUUgUCGUGGC-CCaCCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 44835 0.67 0.81704
Target:  5'- --uCGGgACCGGGgcgagcggggucgUGGAGGGGGgGCGc -3'
miRNA:   3'- cuuGUCgUGGCCC-------------ACCUUCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 48134 0.67 0.843097
Target:  5'- cGGCGGCGCUGGG-GGuuccuGGCACc -3'
miRNA:   3'- cUUGUCGUGGCCCaCCuucu-CCGUGc -5'
29382 5' -56.5 NC_006151.1 + 54148 0.68 0.752616
Target:  5'- cGGCGGCGCCGcGGaGGAGGcuaauaaccuguuGGGCGCc -3'
miRNA:   3'- cUUGUCGUGGC-CCaCCUUC-------------UCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 54623 0.69 0.694122
Target:  5'- cGGGCGcGCcCCGGGgGGAAGcggcGGCGCGa -3'
miRNA:   3'- -CUUGU-CGuGGCCCaCCUUCu---CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 58648 0.72 0.551188
Target:  5'- --cCAGCGCCGGGaGGgcGcGGCGCa -3'
miRNA:   3'- cuuGUCGUGGCCCaCCuuCuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 63487 0.7 0.673787
Target:  5'- cGGCGGCGCCcgaagaaGGUGGccagguGGGGGCGCGc -3'
miRNA:   3'- cUUGUCGUGGc------CCACCu-----UCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 67659 0.66 0.888093
Target:  5'- gGAACAGCACgc---GGAAGAGGCcCGa -3'
miRNA:   3'- -CUUGUCGUGgcccaCCUUCUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 67860 0.69 0.738022
Target:  5'- cGAGcCGGCGCCGaGGUGGcGcgcgcgccagcccgcGGGGCACa -3'
miRNA:   3'- -CUU-GUCGUGGC-CCACCuU---------------CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 68277 0.69 0.714249
Target:  5'- -cGCGGCGCCGGGcgccacGGcGGccAGGCGCGc -3'
miRNA:   3'- cuUGUCGUGGCCCa-----CCuUC--UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 72173 0.69 0.724211
Target:  5'- cGAGCAGCGgCGGGac---GAGGCACa -3'
miRNA:   3'- -CUUGUCGUgGCCCaccuuCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 72586 0.67 0.834884
Target:  5'- uGACAGagUCGGGgugagGGggGGGGCAgGg -3'
miRNA:   3'- cUUGUCguGGCCCa----CCuuCUCCGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.