miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 17364 0.7 0.654339
Target:  5'- aGAACGGCGCCgugGGGUcGGAccguguccgcacgacGGGGCGCGu -3'
miRNA:   3'- -CUUGUCGUGG---CCCA-CCUu--------------CUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 20449 0.72 0.550184
Target:  5'- gGAGCGGgGCUcggGGGUGGcgccggucccccgGGGGGGCGCGg -3'
miRNA:   3'- -CUUGUCgUGG---CCCACC-------------UUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 20614 0.75 0.409573
Target:  5'- cGACGGCGUgGGGUGGuGGGGGCGCc -3'
miRNA:   3'- cUUGUCGUGgCCCACCuUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 22265 0.66 0.888093
Target:  5'- ---gGGUACgCGGGcgGGggGAaggucGGCGCGg -3'
miRNA:   3'- cuugUCGUG-GCCCa-CCuuCU-----CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 22534 0.75 0.40094
Target:  5'- cGGGCGGgGCCGGGUcaGGcGGAGGcCACGu -3'
miRNA:   3'- -CUUGUCgUGGCCCA--CCuUCUCC-GUGC- -5'
29382 5' -56.5 NC_006151.1 + 23013 0.68 0.791187
Target:  5'- uGGgGGCGCgGgGGUGGuGGAGGCgGCGa -3'
miRNA:   3'- cUUgUCGUGgC-CCACCuUCUCCG-UGC- -5'
29382 5' -56.5 NC_006151.1 + 23711 0.7 0.683976
Target:  5'- gGGGCAGCcguaguACuCGcGGUGGAcgAGGGGCACc -3'
miRNA:   3'- -CUUGUCG------UG-GC-CCACCU--UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 26245 0.67 0.843097
Target:  5'- uGAgGGCACaacagaGGGgaggGGGAGAGGgGCa -3'
miRNA:   3'- cUUgUCGUGg-----CCCa---CCUUCUCCgUGc -5'
29382 5' -56.5 NC_006151.1 + 26289 0.67 0.80025
Target:  5'- cGGACGGUg--GGGUGGggGGGGUggGg -3'
miRNA:   3'- -CUUGUCGuggCCCACCuuCUCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 26351 0.67 0.80916
Target:  5'- gGGGCGGCGgCGGGccGcGucGGGGCGCGc -3'
miRNA:   3'- -CUUGUCGUgGCCCa-C-CuuCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 27017 0.66 0.873951
Target:  5'- gGAGCAGgGCCugccagcaGGG-GGccGAGGGGCGCu -3'
miRNA:   3'- -CUUGUCgUGG--------CCCaCC--UUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 27497 0.69 0.734094
Target:  5'- uGGugGGaACgGGGUgGGAGGGGGUGCGa -3'
miRNA:   3'- -CUugUCgUGgCCCA-CCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 27568 0.69 0.734094
Target:  5'- gGGACgGGgGCCGGGUGGGugggcGAGGCucccCGa -3'
miRNA:   3'- -CUUG-UCgUGGCCCACCUu----CUCCGu---GC- -5'
29382 5' -56.5 NC_006151.1 + 27624 0.69 0.694122
Target:  5'- cGAGCccGGcCGCCccgacGGGUGGggGuGGCugGa -3'
miRNA:   3'- -CUUG--UC-GUGG-----CCCACCuuCuCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 27940 0.68 0.791187
Target:  5'- uGAGCcgaucGCGCgGGGUGGGgagggaGGGGGgACGg -3'
miRNA:   3'- -CUUGu----CGUGgCCCACCU------UCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 29468 0.73 0.501781
Target:  5'- gGAGCGggcGCGCCGGGagaGGAAaGGGCGCGc -3'
miRNA:   3'- -CUUGU---CGUGGCCCa--CCUUcUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 29676 0.69 0.714249
Target:  5'- gGGGgGGgGCgGGGUGGggGAucgcGGCACc -3'
miRNA:   3'- -CUUgUCgUGgCCCACCuuCU----CCGUGc -5'
29382 5' -56.5 NC_006151.1 + 30812 0.66 0.858937
Target:  5'- cGGgGGCACgCGGGcgGGAGGAGuuGCGu -3'
miRNA:   3'- cUUgUCGUG-GCCCa-CCUUCUCcgUGC- -5'
29382 5' -56.5 NC_006151.1 + 30867 0.7 0.653314
Target:  5'- cGGCGGCGgCGGaGgaggggGGAAGAGGCgGCGa -3'
miRNA:   3'- cUUGUCGUgGCC-Ca-----CCUUCUCCG-UGC- -5'
29382 5' -56.5 NC_006151.1 + 30957 0.66 0.873951
Target:  5'- cGGCGGC-CCGGGagagcGGgcGGGGgACGg -3'
miRNA:   3'- cUUGUCGuGGCCCa----CCuuCUCCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.