Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29382 | 5' | -56.5 | NC_006151.1 | + | 120060 | 0.66 | 0.881134 |
Target: 5'- cGGGCAGC-CCG--UGGAGG-GGCGCa -3' miRNA: 3'- -CUUGUCGuGGCccACCUUCuCCGUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 32121 | 0.66 | 0.881134 |
Target: 5'- aGAGgGGgACgGGG-GGAgagagagcgAGGGGCGCGa -3' miRNA: 3'- -CUUgUCgUGgCCCaCCU---------UCUCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 5271 | 0.66 | 0.873951 |
Target: 5'- cGGAgGGCGagCGGGccgGGGAGAGGUcCGa -3' miRNA: 3'- -CUUgUCGUg-GCCCa--CCUUCUCCGuGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 30957 | 0.66 | 0.873951 |
Target: 5'- cGGCGGC-CCGGGagagcGGgcGGGGgACGg -3' miRNA: 3'- cUUGUCGuGGCCCa----CCuuCUCCgUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 8385 | 0.66 | 0.873951 |
Target: 5'- cGGGgGGguCCGGGaUGGggGGGGUc-- -3' miRNA: 3'- -CUUgUCguGGCCC-ACCuuCUCCGugc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 141180 | 0.66 | 0.873951 |
Target: 5'- uAGCGGCAgUCGGGgcaGGucaacugcGGGAGGCACu -3' miRNA: 3'- cUUGUCGU-GGCCCa--CC--------UUCUCCGUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 133967 | 0.67 | 0.829866 |
Target: 5'- cAGCGGCAgCGGccccucgguggagacGaUGGAAGAGaGCGCGg -3' miRNA: 3'- cUUGUCGUgGCC---------------C-ACCUUCUC-CGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 141715 | 0.67 | 0.827333 |
Target: 5'- -cGCGGUGCcCGGGgcguuaauacccaggGcGGAGGGGCGCGg -3' miRNA: 3'- cuUGUCGUG-GCCCa--------------C-CUUCUCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 32570 | 0.67 | 0.826485 |
Target: 5'- cGGGCAcccGCgGCCGGGcGGAGGGGGaaGCGg -3' miRNA: 3'- -CUUGU---CG-UGGCCCaCCUUCUCCg-UGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 3242 | 0.67 | 0.817907 |
Target: 5'- aGGCGGCGCgGcGGcGGAGcGGGGCGCc -3' miRNA: 3'- cUUGUCGUGgC-CCaCCUU-CUCCGUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 44835 | 0.67 | 0.81704 |
Target: 5'- --uCGGgACCGGGgcgagcggggucgUGGAGGGGGgGCGc -3' miRNA: 3'- cuuGUCgUGGCCC-------------ACCUUCUCCgUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 36574 | 0.67 | 0.80916 |
Target: 5'- -cGCAGCGCCGGcacGGcGGGGGCcCGc -3' miRNA: 3'- cuUGUCGUGGCCca-CCuUCUCCGuGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 72586 | 0.67 | 0.834884 |
Target: 5'- uGACAGagUCGGGgugagGGggGGGGCAgGg -3' miRNA: 3'- cUUGUCguGGCCCa----CCuuCUCCGUgC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 14101 | 0.67 | 0.834884 |
Target: 5'- cAACGaCGCCgacGGGgaucgaccGGGAGAGGCGCGg -3' miRNA: 3'- cUUGUcGUGG---CCCa-------CCUUCUCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 127850 | 0.67 | 0.834884 |
Target: 5'- -cGCGGCugCGcc-GGAGGGGGCGCc -3' miRNA: 3'- cuUGUCGugGCccaCCUUCUCCGUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 26245 | 0.67 | 0.843097 |
Target: 5'- uGAgGGCACaacagaGGGgaggGGGAGAGGgGCa -3' miRNA: 3'- cUUgUCGUGg-----CCCa---CCUUCUCCgUGc -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 2614 | 0.67 | 0.843097 |
Target: 5'- cAGCGGgACCGGGguccgGGGcccGGCGCGg -3' miRNA: 3'- cUUGUCgUGGCCCa----CCUucuCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 96715 | 0.67 | 0.843097 |
Target: 5'- gGGGCGGCGgCGGacgaGGAGGcggcGGGCGCGa -3' miRNA: 3'- -CUUGUCGUgGCCca--CCUUC----UCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 111258 | 0.67 | 0.843097 |
Target: 5'- cAGCAGCgagGCCGGGaaccgcgcgGGcGGGGGGUACGc -3' miRNA: 3'- cUUGUCG---UGGCCCa--------CC-UUCUCCGUGC- -5' |
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29382 | 5' | -56.5 | NC_006151.1 | + | 26351 | 0.67 | 0.80916 |
Target: 5'- gGGGCGGCGgCGGGccGcGucGGGGCGCGc -3' miRNA: 3'- -CUUGUCGUgGCCCa-C-CuuCUCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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