miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 120060 0.66 0.881134
Target:  5'- cGGGCAGC-CCG--UGGAGG-GGCGCa -3'
miRNA:   3'- -CUUGUCGuGGCccACCUUCuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 32121 0.66 0.881134
Target:  5'- aGAGgGGgACgGGG-GGAgagagagcgAGGGGCGCGa -3'
miRNA:   3'- -CUUgUCgUGgCCCaCCU---------UCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 5271 0.66 0.873951
Target:  5'- cGGAgGGCGagCGGGccgGGGAGAGGUcCGa -3'
miRNA:   3'- -CUUgUCGUg-GCCCa--CCUUCUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 30957 0.66 0.873951
Target:  5'- cGGCGGC-CCGGGagagcGGgcGGGGgACGg -3'
miRNA:   3'- cUUGUCGuGGCCCa----CCuuCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 8385 0.66 0.873951
Target:  5'- cGGGgGGguCCGGGaUGGggGGGGUc-- -3'
miRNA:   3'- -CUUgUCguGGCCC-ACCuuCUCCGugc -5'
29382 5' -56.5 NC_006151.1 + 141180 0.66 0.873951
Target:  5'- uAGCGGCAgUCGGGgcaGGucaacugcGGGAGGCACu -3'
miRNA:   3'- cUUGUCGU-GGCCCa--CC--------UUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 133967 0.67 0.829866
Target:  5'- cAGCGGCAgCGGccccucgguggagacGaUGGAAGAGaGCGCGg -3'
miRNA:   3'- cUUGUCGUgGCC---------------C-ACCUUCUC-CGUGC- -5'
29382 5' -56.5 NC_006151.1 + 141715 0.67 0.827333
Target:  5'- -cGCGGUGCcCGGGgcguuaauacccaggGcGGAGGGGCGCGg -3'
miRNA:   3'- cuUGUCGUG-GCCCa--------------C-CUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 32570 0.67 0.826485
Target:  5'- cGGGCAcccGCgGCCGGGcGGAGGGGGaaGCGg -3'
miRNA:   3'- -CUUGU---CG-UGGCCCaCCUUCUCCg-UGC- -5'
29382 5' -56.5 NC_006151.1 + 3242 0.67 0.817907
Target:  5'- aGGCGGCGCgGcGGcGGAGcGGGGCGCc -3'
miRNA:   3'- cUUGUCGUGgC-CCaCCUU-CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 44835 0.67 0.81704
Target:  5'- --uCGGgACCGGGgcgagcggggucgUGGAGGGGGgGCGc -3'
miRNA:   3'- cuuGUCgUGGCCC-------------ACCUUCUCCgUGC- -5'
29382 5' -56.5 NC_006151.1 + 36574 0.67 0.80916
Target:  5'- -cGCAGCGCCGGcacGGcGGGGGCcCGc -3'
miRNA:   3'- cuUGUCGUGGCCca-CCuUCUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 72586 0.67 0.834884
Target:  5'- uGACAGagUCGGGgugagGGggGGGGCAgGg -3'
miRNA:   3'- cUUGUCguGGCCCa----CCuuCUCCGUgC- -5'
29382 5' -56.5 NC_006151.1 + 14101 0.67 0.834884
Target:  5'- cAACGaCGCCgacGGGgaucgaccGGGAGAGGCGCGg -3'
miRNA:   3'- cUUGUcGUGG---CCCa-------CCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 127850 0.67 0.834884
Target:  5'- -cGCGGCugCGcc-GGAGGGGGCGCc -3'
miRNA:   3'- cuUGUCGugGCccaCCUUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 26245 0.67 0.843097
Target:  5'- uGAgGGCACaacagaGGGgaggGGGAGAGGgGCa -3'
miRNA:   3'- cUUgUCGUGg-----CCCa---CCUUCUCCgUGc -5'
29382 5' -56.5 NC_006151.1 + 2614 0.67 0.843097
Target:  5'- cAGCGGgACCGGGguccgGGGcccGGCGCGg -3'
miRNA:   3'- cUUGUCgUGGCCCa----CCUucuCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 96715 0.67 0.843097
Target:  5'- gGGGCGGCGgCGGacgaGGAGGcggcGGGCGCGa -3'
miRNA:   3'- -CUUGUCGUgGCCca--CCUUC----UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 111258 0.67 0.843097
Target:  5'- cAGCAGCgagGCCGGGaaccgcgcgGGcGGGGGGUACGc -3'
miRNA:   3'- cUUGUCG---UGGCCCa--------CC-UUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 26351 0.67 0.80916
Target:  5'- gGGGCGGCGgCGGGccGcGucGGGGCGCGc -3'
miRNA:   3'- -CUUGUCGUgGCCCa-C-CuuCUCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.