miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 3842 0.71 0.581544
Target:  5'- uGGAgGGCccggaGCCGGGgaggccGGAGGGGGCGCc -3'
miRNA:   3'- -CUUgUCG-----UGGCCCa-----CCUUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 84382 0.71 0.591745
Target:  5'- -cGCGGCGCgCGGGgacgggcgGGGAGcggguGGGCGCGg -3'
miRNA:   3'- cuUGUCGUG-GCCCa-------CCUUC-----UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 84688 0.71 0.606075
Target:  5'- cGAGCAGCugCGgccgcuggagcggcaGGUGGAGcgcguggccGAGGCGCu -3'
miRNA:   3'- -CUUGUCGugGC---------------CCACCUU---------CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 87796 0.7 0.632772
Target:  5'- uGggUGGgAgaGGGUGGGAGAgGGCGCGc -3'
miRNA:   3'- -CuuGUCgUggCCCACCUUCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 11767 0.7 0.653314
Target:  5'- uGAGCGuGCGCgaaGGG-GGGAGAgGGCGCGu -3'
miRNA:   3'- -CUUGU-CGUGg--CCCaCCUUCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 30867 0.7 0.653314
Target:  5'- cGGCGGCGgCGGaGgaggggGGAAGAGGCgGCGa -3'
miRNA:   3'- cUUGUCGUgGCC-Ca-----CCUUCUCCG-UGC- -5'
29382 5' -56.5 NC_006151.1 + 17364 0.7 0.654339
Target:  5'- aGAACGGCGCCgugGGGUcGGAccguguccgcacgacGGGGCGCGu -3'
miRNA:   3'- -CUUGUCGUGG---CCCA-CCUu--------------CUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 136773 0.7 0.663563
Target:  5'- cAugGGCGCCGGcuacGUGGAGGAccGCACGu -3'
miRNA:   3'- cUugUCGUGGCC----CACCUUCUc-CGUGC- -5'
29382 5' -56.5 NC_006151.1 + 76675 0.7 0.663563
Target:  5'- -cGCGGuCGCUGGGgagcagggGGGAGAguGGCGCGg -3'
miRNA:   3'- cuUGUC-GUGGCCCa-------CCUUCU--CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 114888 0.7 0.663563
Target:  5'- cGAGCAGCuucCCGGGcGcGAGGcccGGGCGCa -3'
miRNA:   3'- -CUUGUCGu--GGCCCaC-CUUC---UCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 82398 0.7 0.673787
Target:  5'- cGAGCuccGCGCCcgaGGGcGGccccGAGAGGCGCGg -3'
miRNA:   3'- -CUUGu--CGUGG---CCCaCC----UUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 63487 0.7 0.673787
Target:  5'- cGGCGGCGCCcgaagaaGGUGGccagguGGGGGCGCGc -3'
miRNA:   3'- cUUGUCGUGGc------CCACCu-----UCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 74295 0.7 0.677867
Target:  5'- uGGACAGCACCGaccacucggcgucguGGUGcGGgugcAGGGGCugGu -3'
miRNA:   3'- -CUUGUCGUGGC---------------CCAC-CU----UCUCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 23711 0.7 0.683976
Target:  5'- gGGGCAGCcguaguACuCGcGGUGGAcgAGGGGCACc -3'
miRNA:   3'- -CUUGUCG------UG-GC-CCACCU--UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 54623 0.69 0.694122
Target:  5'- cGGGCGcGCcCCGGGgGGAAGcggcGGCGCGa -3'
miRNA:   3'- -CUUGU-CGuGGCCCaCCUUCu---CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 81268 0.69 0.694122
Target:  5'- cGAGCAGCGCCucGGcgGGGAucucGGGCGCGg -3'
miRNA:   3'- -CUUGUCGUGGc-CCa-CCUUc---UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 27624 0.69 0.694122
Target:  5'- cGAGCccGGcCGCCccgacGGGUGGggGuGGCugGa -3'
miRNA:   3'- -CUUG--UC-GUGG-----CCCACCuuCuCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 5649 0.69 0.694122
Target:  5'- aGAcCGGC-CCGGcGgcGGggGAGGCugGg -3'
miRNA:   3'- -CUuGUCGuGGCC-Ca-CCuuCUCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 98949 0.69 0.704217
Target:  5'- aGGCGGCGCgGGccGUGGAcGAGGCGgCGc -3'
miRNA:   3'- cUUGUCGUGgCC--CACCUuCUCCGU-GC- -5'
29382 5' -56.5 NC_006151.1 + 68277 0.69 0.714249
Target:  5'- -cGCGGCGCCGGGcgccacGGcGGccAGGCGCGc -3'
miRNA:   3'- cuUGUCGUGGCCCa-----CCuUC--UCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.