miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 132215 1.08 0.002756
Target:  5'- uGAACAGCACCGGGUGGAAGAGGCACGu -3'
miRNA:   3'- -CUUGUCGUGGCCCACCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 89540 0.8 0.188614
Target:  5'- cGAGCAGCGCCGaggccGGUGGAGGccgcgaggcugauGGGCACGc -3'
miRNA:   3'- -CUUGUCGUGGC-----CCACCUUC-------------UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 135768 0.8 0.203811
Target:  5'- gGGACGGCGCCGGGcUGGAcGAGGC-Cu -3'
miRNA:   3'- -CUUGUCGUGGCCC-ACCUuCUCCGuGc -5'
29382 5' -56.5 NC_006151.1 + 82879 0.78 0.27943
Target:  5'- -cGCGGCG-CGGGUGGGAGGGGCGa- -3'
miRNA:   3'- cuUGUCGUgGCCCACCUUCUCCGUgc -5'
29382 5' -56.5 NC_006151.1 + 44396 0.77 0.29978
Target:  5'- cGGgGGCGCCGaGGaGGGAGGGGCGCGu -3'
miRNA:   3'- cUUgUCGUGGC-CCaCCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 133641 0.77 0.306813
Target:  5'- gGGGCGGUgguCCGGGUGcGAGAGGCGCu -3'
miRNA:   3'- -CUUGUCGu--GGCCCACcUUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 7992 0.76 0.351649
Target:  5'- -cGCGGUACCucgggcGGGcgGGAGGGGGCGCGa -3'
miRNA:   3'- cuUGUCGUGG------CCCa-CCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 22534 0.75 0.40094
Target:  5'- cGGGCGGgGCCGGGUcaGGcGGAGGcCACGu -3'
miRNA:   3'- -CUUGUCgUGGCCCA--CCuUCUCC-GUGC- -5'
29382 5' -56.5 NC_006151.1 + 20614 0.75 0.409573
Target:  5'- cGACGGCGUgGGGUGGuGGGGGCGCc -3'
miRNA:   3'- cUUGUCGUGgCCCACCuUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 99694 0.74 0.435249
Target:  5'- cGACGGCGCCGGG-GaGAcgcccauGGAGGCGCc -3'
miRNA:   3'- cUUGUCGUGGCCCaC-CU-------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 13085 0.74 0.44523
Target:  5'- aGAGCgGGCGuCCGGGaaGGGAGAGGuCGCGg -3'
miRNA:   3'- -CUUG-UCGU-GGCCCa-CCUUCUCC-GUGC- -5'
29382 5' -56.5 NC_006151.1 + 9624 0.74 0.44523
Target:  5'- cGGCGGCGaggggggaagCGGGaGGGAGAGGCGCGg -3'
miRNA:   3'- cUUGUCGUg---------GCCCaCCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 88283 0.73 0.47308
Target:  5'- aGACcGcCGCCGGGUGGuagacguGGGGGCGCa -3'
miRNA:   3'- cUUGuC-GUGGCCCACCu------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 31713 0.73 0.501781
Target:  5'- ---gGGCGCCGGGcGGAacggggcguggAGAGGCGCc -3'
miRNA:   3'- cuugUCGUGGCCCaCCU-----------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 29468 0.73 0.501781
Target:  5'- gGAGCGggcGCGCCGGGagaGGAAaGGGCGCGc -3'
miRNA:   3'- -CUUGU---CGUGGCCCa--CCUUcUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 72769 0.72 0.541172
Target:  5'- -cACAGCGgCGGGUacgccuccuGGAAGAGcGCGCa -3'
miRNA:   3'- cuUGUCGUgGCCCA---------CCUUCUC-CGUGc -5'
29382 5' -56.5 NC_006151.1 + 20449 0.72 0.550184
Target:  5'- gGAGCGGgGCUcggGGGUGGcgccggucccccgGGGGGGCGCGg -3'
miRNA:   3'- -CUUGUCgUGG---CCCACC-------------UUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 1792 0.72 0.551188
Target:  5'- aGGAgGGcCACCGGGccggGGAGGcAGGCGCc -3'
miRNA:   3'- -CUUgUC-GUGGCCCa---CCUUC-UCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 58648 0.72 0.551188
Target:  5'- --cCAGCGCCGGGaGGgcGcGGCGCa -3'
miRNA:   3'- cuuGUCGUGGCCCaCCuuCuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 1993 0.72 0.551188
Target:  5'- aGAGCAGaguccgGCCGGGccGAGGGGGCGCc -3'
miRNA:   3'- -CUUGUCg-----UGGCCCacCUUCUCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.