miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 1792 0.72 0.551188
Target:  5'- aGGAgGGcCACCGGGccggGGAGGcAGGCGCc -3'
miRNA:   3'- -CUUgUC-GUGGCCCa---CCUUC-UCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 1993 0.72 0.551188
Target:  5'- aGAGCAGaguccgGCCGGGccGAGGGGGCGCc -3'
miRNA:   3'- -CUUGUCg-----UGGCCCacCUUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 2614 0.67 0.843097
Target:  5'- cAGCGGgACCGGGguccgGGGcccGGCGCGg -3'
miRNA:   3'- cUUGUCgUGGCCCa----CCUucuCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 3242 0.67 0.817907
Target:  5'- aGGCGGCGCgGcGGcGGAGcGGGGCGCc -3'
miRNA:   3'- cUUGUCGUGgC-CCaCCUU-CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 3842 0.71 0.581544
Target:  5'- uGGAgGGCccggaGCCGGGgaggccGGAGGGGGCGCc -3'
miRNA:   3'- -CUUgUCG-----UGGCCCa-----CCUUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 3887 0.66 0.866551
Target:  5'- --cCGGCGCCGGcGcUGGGAcgacGAGGC-CGg -3'
miRNA:   3'- cuuGUCGUGGCC-C-ACCUU----CUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 5028 0.68 0.772637
Target:  5'- --cCGGgGCCGGGgccGggGAGGcCGCGg -3'
miRNA:   3'- cuuGUCgUGGCCCac-CuuCUCC-GUGC- -5'
29382 5' -56.5 NC_006151.1 + 5271 0.66 0.873951
Target:  5'- cGGAgGGCGagCGGGccgGGGAGAGGUcCGa -3'
miRNA:   3'- -CUUgUCGUg-GCCCa--CCUUCUCCGuGC- -5'
29382 5' -56.5 NC_006151.1 + 5364 0.69 0.743887
Target:  5'- -cGCGGCGCCGGcG-GGGcugucucugcGGGGGCGCc -3'
miRNA:   3'- cuUGUCGUGGCC-CaCCU----------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 5649 0.69 0.694122
Target:  5'- aGAcCGGC-CCGGcGgcGGggGAGGCugGg -3'
miRNA:   3'- -CUuGUCGuGGCC-Ca-CCuuCUCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 7992 0.76 0.351649
Target:  5'- -cGCGGUACCucgggcGGGcgGGAGGGGGCGCGa -3'
miRNA:   3'- cuUGUCGUGG------CCCa-CCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 8216 0.66 0.871017
Target:  5'- cGAAgAGgGCCGGGUccccuucccggcggGGAGGGccgggccGGCGCGc -3'
miRNA:   3'- -CUUgUCgUGGCCCA--------------CCUUCU-------CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 8385 0.66 0.873951
Target:  5'- cGGGgGGguCCGGGaUGGggGGGGUc-- -3'
miRNA:   3'- -CUUgUCguGGCCC-ACCuuCUCCGugc -5'
29382 5' -56.5 NC_006151.1 + 9624 0.74 0.44523
Target:  5'- cGGCGGCGaggggggaagCGGGaGGGAGAGGCGCGg -3'
miRNA:   3'- cUUGUCGUg---------GCCCaCCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 11734 0.66 0.866551
Target:  5'- gGAGCGGgGgUGaGG-GGGAGGGGUGCGg -3'
miRNA:   3'- -CUUGUCgUgGC-CCaCCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 11767 0.7 0.653314
Target:  5'- uGAGCGuGCGCgaaGGG-GGGAGAgGGCGCGu -3'
miRNA:   3'- -CUUGU-CGUGg--CCCaCCUUCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 11806 0.67 0.80916
Target:  5'- gGGGCGGggUgGGGUGGggGGcGGCGgCGg -3'
miRNA:   3'- -CUUGUCguGgCCCACCuuCU-CCGU-GC- -5'
29382 5' -56.5 NC_006151.1 + 12413 0.69 0.714249
Target:  5'- aGAgGGgGCUGGGUGGGGuGAGGCGa- -3'
miRNA:   3'- cUUgUCgUGGCCCACCUU-CUCCGUgc -5'
29382 5' -56.5 NC_006151.1 + 13085 0.74 0.44523
Target:  5'- aGAGCgGGCGuCCGGGaaGGGAGAGGuCGCGg -3'
miRNA:   3'- -CUUG-UCGU-GGCCCa-CCUUCUCC-GUGC- -5'
29382 5' -56.5 NC_006151.1 + 14101 0.67 0.834884
Target:  5'- cAACGaCGCCgacGGGgaucgaccGGGAGAGGCGCGg -3'
miRNA:   3'- cUUGUcGUGG---CCCa-------CCUUCUCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.