miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 141715 0.67 0.827333
Target:  5'- -cGCGGUGCcCGGGgcguuaauacccaggGcGGAGGGGCGCGg -3'
miRNA:   3'- cuUGUCGUG-GCCCa--------------C-CUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 141180 0.66 0.873951
Target:  5'- uAGCGGCAgUCGGGgcaGGucaacugcGGGAGGCACu -3'
miRNA:   3'- cUUGUCGU-GGCCCa--CC--------UUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 139639 0.68 0.790273
Target:  5'- --cCGGCGCCGGcGcGGggGucgcggcGGGCGCGc -3'
miRNA:   3'- cuuGUCGUGGCC-CaCCuuC-------UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 137589 0.66 0.888093
Target:  5'- cGACgAGguCgGGGUcgGGAucGGGGGCGCGg -3'
miRNA:   3'- cUUG-UCguGgCCCA--CCU--UCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 137053 0.66 0.866551
Target:  5'- --cCGGCGCCGGuguaccgcGUGGAGcuGGCGCa -3'
miRNA:   3'- cuuGUCGUGGCC--------CACCUUcuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 136983 0.66 0.881134
Target:  5'- -cGCcGCGCCGGGcGGc--GGGCGCGc -3'
miRNA:   3'- cuUGuCGUGGCCCaCCuucUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 136773 0.7 0.663563
Target:  5'- cAugGGCGCCGGcuacGUGGAGGAccGCACGu -3'
miRNA:   3'- cUugUCGUGGCC----CACCUUCUc-CGUGC- -5'
29382 5' -56.5 NC_006151.1 + 135768 0.8 0.203811
Target:  5'- gGGACGGCGCCGGGcUGGAcGAGGC-Cu -3'
miRNA:   3'- -CUUGUCGUGGCCC-ACCUuCUCCGuGc -5'
29382 5' -56.5 NC_006151.1 + 133967 0.67 0.829866
Target:  5'- cAGCGGCAgCGGccccucgguggagacGaUGGAAGAGaGCGCGg -3'
miRNA:   3'- cUUGUCGUgGCC---------------C-ACCUUCUC-CGUGC- -5'
29382 5' -56.5 NC_006151.1 + 133641 0.77 0.306813
Target:  5'- gGGGCGGUgguCCGGGUGcGAGAGGCGCu -3'
miRNA:   3'- -CUUGUCGu--GGCCCACcUUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 132764 0.66 0.869537
Target:  5'- cAGCAGCGCCGGGcccucgucGAAggccaggucgcugauGAGGCGCu -3'
miRNA:   3'- cUUGUCGUGGCCCac------CUU---------------CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 132215 1.08 0.002756
Target:  5'- uGAACAGCACCGGGUGGAAGAGGCACGu -3'
miRNA:   3'- -CUUGUCGUGGCCCACCUUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 132122 0.67 0.79935
Target:  5'- cGAGCGGCaggcccagcucgcGCCGgcGGUGGuuGAcGGCGCGc -3'
miRNA:   3'- -CUUGUCG-------------UGGC--CCACCuuCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 130812 0.69 0.743887
Target:  5'- -cGCGGCGuCCGGGUcccgcucGAGGCGCGg -3'
miRNA:   3'- cuUGUCGU-GGCCCAccuu---CUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 128235 0.66 0.848732
Target:  5'- cGugGGCGCCaggucgccgaucagGuGGUGGAAGcGGCACu -3'
miRNA:   3'- cUugUCGUGG--------------C-CCACCUUCuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 127850 0.67 0.834884
Target:  5'- -cGCGGCugCGcc-GGAGGGGGCGCc -3'
miRNA:   3'- cuUGUCGugGCccaCCUUCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 121091 0.66 0.869537
Target:  5'- cGGCGGCGCCGGGcUGcacgaccacucgcucGggGAG-CACGu -3'
miRNA:   3'- cUUGUCGUGGCCC-AC---------------CuuCUCcGUGC- -5'
29382 5' -56.5 NC_006151.1 + 120060 0.66 0.881134
Target:  5'- cGGGCAGC-CCG--UGGAGG-GGCGCa -3'
miRNA:   3'- -CUUGUCGuGGCccACCUUCuCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 114888 0.7 0.663563
Target:  5'- cGAGCAGCuucCCGGGcGcGAGGcccGGGCGCa -3'
miRNA:   3'- -CUUGUCGu--GGCCCaC-CUUC---UCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 112055 0.68 0.772637
Target:  5'- cGGGCGGCGgCGguGGUGGu-GGGGCugGu -3'
miRNA:   3'- -CUUGUCGUgGC--CCACCuuCUCCGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.