miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29382 5' -56.5 NC_006151.1 + 111258 0.67 0.843097
Target:  5'- cAGCAGCgagGCCGGGaaccgcgcgGGcGGGGGGUACGc -3'
miRNA:   3'- cUUGUCG---UGGCCCa--------CC-UUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 99694 0.74 0.435249
Target:  5'- cGACGGCGCCGGG-GaGAcgcccauGGAGGCGCc -3'
miRNA:   3'- cUUGUCGUGGCCCaC-CU-------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 98949 0.69 0.704217
Target:  5'- aGGCGGCGCgGGccGUGGAcGAGGCGgCGc -3'
miRNA:   3'- cUUGUCGUGgCC--CACCUuCUCCGU-GC- -5'
29382 5' -56.5 NC_006151.1 + 97366 0.66 0.851117
Target:  5'- cGGCGGCGgCGGGcgcGGcGGGGGCGuCGg -3'
miRNA:   3'- cUUGUCGUgGCCCa--CCuUCUCCGU-GC- -5'
29382 5' -56.5 NC_006151.1 + 96715 0.67 0.843097
Target:  5'- gGGGCGGCGgCGGacgaGGAGGcggcGGGCGCGa -3'
miRNA:   3'- -CUUGUCGUgGCCca--CCUUC----UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 95627 0.66 0.873951
Target:  5'- -uGCAGCgagGCCaGGUGc--GAGGCGCGg -3'
miRNA:   3'- cuUGUCG---UGGcCCACcuuCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 90742 0.69 0.724211
Target:  5'- cGGCGGCGCCcucGGG-GGcGGcGGGCACGg -3'
miRNA:   3'- cUUGUCGUGG---CCCaCCuUC-UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 89540 0.8 0.188614
Target:  5'- cGAGCAGCGCCGaggccGGUGGAGGccgcgaggcugauGGGCACGc -3'
miRNA:   3'- -CUUGUCGUGGC-----CCACCUUC-------------UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 88283 0.73 0.47308
Target:  5'- aGACcGcCGCCGGGUGGuagacguGGGGGCGCa -3'
miRNA:   3'- cUUGuC-GUGGCCCACCu------UCUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 87796 0.7 0.632772
Target:  5'- uGggUGGgAgaGGGUGGGAGAgGGCGCGc -3'
miRNA:   3'- -CuuGUCgUggCCCACCUUCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 84688 0.71 0.606075
Target:  5'- cGAGCAGCugCGgccgcuggagcggcaGGUGGAGcgcguggccGAGGCGCu -3'
miRNA:   3'- -CUUGUCGugGC---------------CCACCUU---------CUCCGUGc -5'
29382 5' -56.5 NC_006151.1 + 84382 0.71 0.591745
Target:  5'- -cGCGGCGCgCGGGgacgggcgGGGAGcggguGGGCGCGg -3'
miRNA:   3'- cuUGUCGUG-GCCCa-------CCUUC-----UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 82879 0.78 0.27943
Target:  5'- -cGCGGCG-CGGGUGGGAGGGGCGa- -3'
miRNA:   3'- cuUGUCGUgGCCCACCUUCUCCGUgc -5'
29382 5' -56.5 NC_006151.1 + 82398 0.7 0.673787
Target:  5'- cGAGCuccGCGCCcgaGGGcGGccccGAGAGGCGCGg -3'
miRNA:   3'- -CUUGu--CGUGG---CCCaCC----UUCUCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 81722 0.66 0.888093
Target:  5'- ---gGGCGCCGGGUccucgccgaaGGuccAGGcGGCGCGg -3'
miRNA:   3'- cuugUCGUGGCCCA----------CCu--UCU-CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 81268 0.69 0.694122
Target:  5'- cGAGCAGCGCCucGGcgGGGAucucGGGCGCGg -3'
miRNA:   3'- -CUUGUCGUGGc-CCa-CCUUc---UCCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 80027 0.69 0.734094
Target:  5'- --uCGGCgAUCGGGgacGGggGAGGCGgGa -3'
miRNA:   3'- cuuGUCG-UGGCCCa--CCuuCUCCGUgC- -5'
29382 5' -56.5 NC_006151.1 + 76675 0.7 0.663563
Target:  5'- -cGCGGuCGCUGGGgagcagggGGGAGAguGGCGCGg -3'
miRNA:   3'- cuUGUC-GUGGCCCa-------CCUUCU--CCGUGC- -5'
29382 5' -56.5 NC_006151.1 + 74295 0.7 0.677867
Target:  5'- uGGACAGCACCGaccacucggcgucguGGUGcGGgugcAGGGGCugGu -3'
miRNA:   3'- -CUUGUCGUGGC---------------CCAC-CU----UCUCCGugC- -5'
29382 5' -56.5 NC_006151.1 + 73861 0.66 0.858937
Target:  5'- ---gGGCGCCGGGUaGAAGaAGGCccccuCGa -3'
miRNA:   3'- cuugUCGUGGCCCAcCUUC-UCCGu----GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.