miRNA display CGI


Results 41 - 60 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 104562 0.76 0.101709
Target:  5'- cGCCC-UGGGCGCGcGGCGCGCgGACg- -3'
miRNA:   3'- -CGGGcGCUCGCGC-CCGCGCGgCUGgc -5'
29383 3' -66.6 NC_006151.1 + 123020 0.76 0.101709
Target:  5'- cGCCgGCGgacgccguGGCGUGGGCGgaccUGCCGGCCGc -3'
miRNA:   3'- -CGGgCGC--------UCGCGCCCGC----GCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 68238 0.76 0.104219
Target:  5'- cGCCCGCGGGCGCGucagguagacGcGCGCGgCGACgGu -3'
miRNA:   3'- -CGGGCGCUCGCGC----------C-CGCGCgGCUGgC- -5'
29383 3' -66.6 NC_006151.1 + 78336 0.76 0.104219
Target:  5'- cGCCCcgggGCGGGCGCGGGCGaCGaCGACg- -3'
miRNA:   3'- -CGGG----CGCUCGCGCCCGC-GCgGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 139573 0.76 0.106788
Target:  5'- gGUCCGCGAGCGCcuGGGCucGCGCCcccCCGa -3'
miRNA:   3'- -CGGGCGCUCGCG--CCCG--CGCGGcu-GGC- -5'
29383 3' -66.6 NC_006151.1 + 81763 0.76 0.109417
Target:  5'- gGUCCGCGGGCGCcaccGGGaCGCGCuCGGCgCGc -3'
miRNA:   3'- -CGGGCGCUCGCG----CCC-GCGCG-GCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 99721 0.76 0.109417
Target:  5'- gGCgCCGaCGAGCGCGGcGCuCGUCGACCu -3'
miRNA:   3'- -CG-GGC-GCUCGCGCC-CGcGCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 31240 0.76 0.109417
Target:  5'- gGCCCgGCGAGCgaGCGGGCGgGCgaGCCGg -3'
miRNA:   3'- -CGGG-CGCUCG--CGCCCGCgCGgcUGGC- -5'
29383 3' -66.6 NC_006151.1 + 76681 0.76 0.110485
Target:  5'- cGCUgGgGAgcaggggggagagugGCGCGGGCGCGCCGcgGCCGc -3'
miRNA:   3'- -CGGgCgCU---------------CGCGCCCGCGCGGC--UGGC- -5'
29383 3' -66.6 NC_006151.1 + 49578 0.75 0.114857
Target:  5'- aGCCCGCGcuCGCcGGCGCcCCGGCCa -3'
miRNA:   3'- -CGGGCGCucGCGcCCGCGcGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 23401 0.75 0.11767
Target:  5'- aCCCGCGccAGCGCuGGUGguCGCCGGCCGu -3'
miRNA:   3'- cGGGCGC--UCGCGcCCGC--GCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 89945 0.75 0.120548
Target:  5'- gGUCCGCGGGCGCggccaggaaccGGGCGCGgCUGGCg- -3'
miRNA:   3'- -CGGGCGCUCGCG-----------CCCGCGC-GGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 115202 0.75 0.120548
Target:  5'- cGCgCCGCGGGCGCGcGCGCGaucgUGGCCGc -3'
miRNA:   3'- -CG-GGCGCUCGCGCcCGCGCg---GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 106674 0.75 0.123491
Target:  5'- aGgCCGCG-GCGCucGGCGCGCCGggcGCCGg -3'
miRNA:   3'- -CgGGCGCuCGCGc-CCGCGCGGC---UGGC- -5'
29383 3' -66.6 NC_006151.1 + 726 0.75 0.123491
Target:  5'- gGUCCGCGGGCGgGGGCuuccgcuccgcgGCGCCcGCCc -3'
miRNA:   3'- -CGGGCGCUCGCgCCCG------------CGCGGcUGGc -5'
29383 3' -66.6 NC_006151.1 + 122388 0.75 0.129267
Target:  5'- cGCgCCGCGGGCGCGcgcuggcGGCGCucGCCG-CCGu -3'
miRNA:   3'- -CG-GGCGCUCGCGC-------CCGCG--CGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 71021 0.75 0.129578
Target:  5'- uGCgCCGCGAGCucGCGGagcuGCGCGCCGcgcgcgucgucGCCGa -3'
miRNA:   3'- -CG-GGCGCUCG--CGCC----CGCGCGGC-----------UGGC- -5'
29383 3' -66.6 NC_006151.1 + 11320 0.75 0.129578
Target:  5'- -gCCGCGAuaccGCGCGGGCgauaccGCGCgGGCCGc -3'
miRNA:   3'- cgGGCGCU----CGCGCCCG------CGCGgCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 100601 0.75 0.129578
Target:  5'- gGCCCGUgGAGCGCuuccuGGCGCGCUggGACCu -3'
miRNA:   3'- -CGGGCG-CUCGCGc----CCGCGCGG--CUGGc -5'
29383 3' -66.6 NC_006151.1 + 4043 0.74 0.132724
Target:  5'- gGCCuCGCGGGCGCGGGC-C-CCGuCCa -3'
miRNA:   3'- -CGG-GCGCUCGCGCCCGcGcGGCuGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.