miRNA display CGI


Results 21 - 40 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 115563 0.78 0.073866
Target:  5'- cGCCCGCG-G-GCGGGCGCGCgGGCa- -3'
miRNA:   3'- -CGGGCGCuCgCGCCCGCGCGgCUGgc -5'
29383 3' -66.6 NC_006151.1 + 10655 0.77 0.081347
Target:  5'- cCCCGCccaggcggcggggGAGCGCGGaGCGCGCCGcCCc -3'
miRNA:   3'- cGGGCG-------------CUCGCGCC-CGCGCGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 96865 0.77 0.081548
Target:  5'- cGCCCGcCGGGCGCGGcGCGCGCgGGg-- -3'
miRNA:   3'- -CGGGC-GCUCGCGCC-CGCGCGgCUggc -5'
29383 3' -66.6 NC_006151.1 + 139643 0.77 0.081548
Target:  5'- cGCCgGCGcgggggucGCgGCGGGCGCGCCGcCCGa -3'
miRNA:   3'- -CGGgCGCu-------CG-CGCCCGCGCGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 31760 0.77 0.081548
Target:  5'- cGCCUGCG-GCgGCGGGCGCgcGCCGGgCGg -3'
miRNA:   3'- -CGGGCGCuCG-CGCCCGCG--CGGCUgGC- -5'
29383 3' -66.6 NC_006151.1 + 75205 0.77 0.085669
Target:  5'- aGCCCGacgaGGGCGUcgGGGCGCGCguCGGCCa -3'
miRNA:   3'- -CGGGCg---CUCGCG--CCCGCGCG--GCUGGc -5'
29383 3' -66.6 NC_006151.1 + 34614 0.77 0.085669
Target:  5'- cGCCgagCGCGAgGCGCGGGUGgGgCGACCGc -3'
miRNA:   3'- -CGG---GCGCU-CGCGCCCGCgCgGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 130929 0.77 0.087588
Target:  5'- gGCCCGCGGGgGCGGGggcggcgggggguCGCGCgGGCgCGg -3'
miRNA:   3'- -CGGGCGCUCgCGCCC-------------GCGCGgCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 71216 0.77 0.089989
Target:  5'- uGUCCGUGAcCGUGGGCGCgcgcGCCGACCc -3'
miRNA:   3'- -CGGGCGCUcGCGCCCGCG----CGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 13939 0.77 0.089989
Target:  5'- cCCCggggGCGGGCGCcccgGGGaCGCGCCGGCCa -3'
miRNA:   3'- cGGG----CGCUCGCG----CCC-GCGCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 39335 0.77 0.089989
Target:  5'- uGCUCGCGgcucGGCGCGGcGCgGCGCCGGCUc -3'
miRNA:   3'- -CGGGCGC----UCGCGCC-CG-CGCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 68853 0.77 0.092225
Target:  5'- cGCCgCGCGAcGCGUccagcagcgccgGGGCGCGCCcGGCCa -3'
miRNA:   3'- -CGG-GCGCU-CGCG------------CCCGCGCGG-CUGGc -5'
29383 3' -66.6 NC_006151.1 + 132833 0.77 0.094283
Target:  5'- cGCCCGCGGGaCGgccaccaCGGGCG-GCCGGCCc -3'
miRNA:   3'- -CGGGCGCUC-GC-------GCCCGCgCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 69342 0.77 0.094514
Target:  5'- nGCCCGCGAGCGCGGcguagccCGCGuCCaGCCa -3'
miRNA:   3'- -CGGGCGCUCGCGCCc------GCGC-GGcUGGc -5'
29383 3' -66.6 NC_006151.1 + 50158 0.76 0.096857
Target:  5'- cGCCCGaCGAGCGgaCGaGCGCgGCCGGCCGc -3'
miRNA:   3'- -CGGGC-GCUCGC--GCcCGCG-CGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 20142 0.76 0.096857
Target:  5'- gGCgCCGCGGGgGC-GGCGCGUgGACCGc -3'
miRNA:   3'- -CG-GGCGCUCgCGcCCGCGCGgCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 78664 0.76 0.09853
Target:  5'- cGgCCG-GGGCGCGGGUGCuggacgggcucuacGCCGGCCGg -3'
miRNA:   3'- -CgGGCgCUCGCGCCCGCG--------------CGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 106506 0.76 0.099255
Target:  5'- gGCUgGCGcGCGCcgugccGGGCGCGCUGGCCa -3'
miRNA:   3'- -CGGgCGCuCGCG------CCCGCGCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 128798 0.76 0.099255
Target:  5'- cGCCUcgGCGAGCGCGGcGCGCG-UGGCCc -3'
miRNA:   3'- -CGGG--CGCUCGCGCC-CGCGCgGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 118358 0.76 0.099255
Target:  5'- cGCCUGCGAG-GCGGcGCGCGCCcGCUu -3'
miRNA:   3'- -CGGGCGCUCgCGCC-CGCGCGGcUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.