miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 130410 1.09 0.00039
Target:  5'- cGCCCGCGAGCGCGGGCGCGCCGACCGu -3'
miRNA:   3'- -CGGGCGCUCGCGCCCGCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 64492 0.88 0.014648
Target:  5'- cGCCCGCGGGCGCGGGCggcgggcgcGCGCCG-CCa -3'
miRNA:   3'- -CGGGCGCUCGCGCCCG---------CGCGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 96582 0.85 0.023727
Target:  5'- cGCCuCGCGgcgcgaggcgccgGGCGCGGGCGCGCCGACg- -3'
miRNA:   3'- -CGG-GCGC-------------UCGCGCCCGCGCGGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 9037 0.83 0.032263
Target:  5'- cGCCCGCcgGGGCGCcccgcgugcuccGGGgGCGCCGGCCGg -3'
miRNA:   3'- -CGGGCG--CUCGCG------------CCCgCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 129813 0.83 0.033091
Target:  5'- gGCCCGUGAGCGCGGaGCGCGCggCGGCg- -3'
miRNA:   3'- -CGGGCGCUCGCGCC-CGCGCG--GCUGgc -5'
29383 3' -66.6 NC_006151.1 + 52385 0.82 0.035702
Target:  5'- gGCCCGCGGGgGCGGcGgGCGCCG-CCGc -3'
miRNA:   3'- -CGGGCGCUCgCGCC-CgCGCGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 130277 0.82 0.040509
Target:  5'- gGCCC-CGAGgcCGCGGGCgcGCGCCGGCCGa -3'
miRNA:   3'- -CGGGcGCUC--GCGCCCG--CGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 117255 0.81 0.042604
Target:  5'- gGCCCGa-GGCGCGGGcCGCGCgCGGCCGc -3'
miRNA:   3'- -CGGGCgcUCGCGCCC-GCGCG-GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 136441 0.81 0.043691
Target:  5'- cGCCgCGCgcuacgucgacGAGCGCGuGCGCGCCGACCGc -3'
miRNA:   3'- -CGG-GCG-----------CUCGCGCcCGCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 50459 0.8 0.049546
Target:  5'- cGCCCGCGGGCgcucgcgccaGCGcGGCGCGaCCGAgCCGg -3'
miRNA:   3'- -CGGGCGCUCG----------CGC-CCGCGC-GGCU-GGC- -5'
29383 3' -66.6 NC_006151.1 + 40070 0.8 0.050806
Target:  5'- gGCCCGCGGGgGCcucGGGCGCcgggGCCGGCCc -3'
miRNA:   3'- -CGGGCGCUCgCG---CCCGCG----CGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 135156 0.8 0.056022
Target:  5'- aGCCCgGCGGGCGCGGcccggacGgGCGCCGGCUGc -3'
miRNA:   3'- -CGGG-CGCUCGCGCC-------CgCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 93568 0.8 0.057585
Target:  5'- -gCCGCGGGgGCGGGCGCGCCaaaGAgCGg -3'
miRNA:   3'- cgGGCGCUCgCGCCCGCGCGG---CUgGC- -5'
29383 3' -66.6 NC_006151.1 + 76807 0.79 0.059043
Target:  5'- cGCCCcgGCGAGgGCGGGCGCGUaguggCGGCCc -3'
miRNA:   3'- -CGGG--CGCUCgCGCCCGCGCG-----GCUGGc -5'
29383 3' -66.6 NC_006151.1 + 71092 0.79 0.060536
Target:  5'- gGCgCCGCGGGCGCGGGC--GCCGugCGc -3'
miRNA:   3'- -CG-GGCGCUCGCGCCCGcgCGGCugGC- -5'
29383 3' -66.6 NC_006151.1 + 104036 0.79 0.065075
Target:  5'- aGCgCGCGcAGCGCcagcucuGGGCGCGCgCGGCCGa -3'
miRNA:   3'- -CGgGCGC-UCGCG-------CCCGCGCG-GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 100915 0.79 0.065237
Target:  5'- cGCCCgacgacGCGAGCGCGGGCGUGCC--CCu -3'
miRNA:   3'- -CGGG------CGCUCGCGCCCGCGCGGcuGGc -5'
29383 3' -66.6 NC_006151.1 + 98353 0.78 0.068566
Target:  5'- cGCCCGCGGGCGUgcgcgggcucuGGGCGCGCgCGcugcGCCu -3'
miRNA:   3'- -CGGGCGCUCGCG-----------CCCGCGCG-GC----UGGc -5'
29383 3' -66.6 NC_006151.1 + 69311 0.78 0.068566
Target:  5'- cGCCgGCGccacacguGCGCGGGCGCGUCG-CCGc -3'
miRNA:   3'- -CGGgCGCu-------CGCGCCCGCGCGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 66524 0.78 0.07029
Target:  5'- gGCUCGCGcGCGCcgcgcucuucggGGGCGCGCgCGGCCGc -3'
miRNA:   3'- -CGGGCGCuCGCG------------CCCGCGCG-GCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.