miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 68275 0.66 0.478472
Target:  5'- -gUCGCG-GCGcCGGGCGCcacGgCGGCCa -3'
miRNA:   3'- cgGGCGCuCGC-GCCCGCG---CgGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 130410 1.09 0.00039
Target:  5'- cGCCCGCGAGCGCGGGCGCGCCGACCGu -3'
miRNA:   3'- -CGGGCGCUCGCGCCCGCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 140209 0.66 0.469766
Target:  5'- -aCCGCGGGgGCGGuGCugcagaaccuGCGCCugaagcucgGGCCGu -3'
miRNA:   3'- cgGGCGCUCgCGCC-CG----------CGCGG---------CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 28099 0.66 0.469766
Target:  5'- cGUCCuCGAGCG-GGGCGCggcuccucGUCGGCuCGg -3'
miRNA:   3'- -CGGGcGCUCGCgCCCGCG--------CGGCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 49341 0.66 0.469766
Target:  5'- gGCCUGCGcGC-CGGaccCGCGCCG-CCa -3'
miRNA:   3'- -CGGGCGCuCGcGCCc--GCGCGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 65047 0.66 0.469766
Target:  5'- gGCCCgGCG-GCgGCGGGCGC-CCGuuaauaaaguCCa -3'
miRNA:   3'- -CGGG-CGCuCG-CGCCCGCGcGGCu---------GGc -5'
29383 3' -66.6 NC_006151.1 + 65316 0.66 0.469766
Target:  5'- aGCCCGCGGcCGuUGaGGaacacgaGCGCgCGGCCGa -3'
miRNA:   3'- -CGGGCGCUcGC-GC-CCg------CGCG-GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 130509 0.66 0.469766
Target:  5'- cGCCgCGCGucucgGGCGCGGGCGuCGCguACa- -3'
miRNA:   3'- -CGG-GCGC-----UCGCGCCCGC-GCGgcUGgc -5'
29383 3' -66.6 NC_006151.1 + 34127 0.66 0.469766
Target:  5'- cGCCCccccacCGGGCGgGGuccGCGCuCCGACCc -3'
miRNA:   3'- -CGGGc-----GCUCGCgCC---CGCGcGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 65367 0.66 0.475852
Target:  5'- cGCCC-CaGGGCGUgcaccacgugccccGGGCGCGCCguGAgCGa -3'
miRNA:   3'- -CGGGcG-CUCGCG--------------CCCGCGCGG--CUgGC- -5'
29383 3' -66.6 NC_006151.1 + 131949 0.66 0.478472
Target:  5'- gGCCacggGCGAGgGCGGGCG-GCaguaCGugUGg -3'
miRNA:   3'- -CGGg---CGCUCgCGCCCGCgCG----GCugGC- -5'
29383 3' -66.6 NC_006151.1 + 113114 0.66 0.478472
Target:  5'- gGgCCGCGGaCGCGGaCGcCGCCGGgcCCGg -3'
miRNA:   3'- -CgGGCGCUcGCGCCcGC-GCGGCU--GGC- -5'
29383 3' -66.6 NC_006151.1 + 112801 0.66 0.478472
Target:  5'- uUUCGCGGGCGCGcGucgcugcaGCGCGCCuucGCCa -3'
miRNA:   3'- cGGGCGCUCGCGC-C--------CGCGCGGc--UGGc -5'
29383 3' -66.6 NC_006151.1 + 127801 0.66 0.478472
Target:  5'- -gCCGCGcGCGgGGGCGCGagGuCCu -3'
miRNA:   3'- cgGGCGCuCGCgCCCGCGCggCuGGc -5'
29383 3' -66.6 NC_006151.1 + 11639 0.66 0.478472
Target:  5'- aCCCGCacAGCGC--GCaCGCCGACCGc -3'
miRNA:   3'- cGGGCGc-UCGCGccCGcGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 37146 0.66 0.478472
Target:  5'- cGCCCGC--GC-CGGGC-CGCC-ACCGu -3'
miRNA:   3'- -CGGGCGcuCGcGCCCGcGCGGcUGGC- -5'
29383 3' -66.6 NC_006151.1 + 48738 0.66 0.478472
Target:  5'- cGCCCGCG-GCGUcGGCGgcaacaacaGCCacgggGGCCGa -3'
miRNA:   3'- -CGGGCGCuCGCGcCCGCg--------CGG-----CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 48896 0.66 0.478472
Target:  5'- cGCCUGCGcuGGCcgaguaccGCGGcCGCuGCCuGACCGa -3'
miRNA:   3'- -CGGGCGC--UCG--------CGCCcGCG-CGG-CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 63315 0.66 0.478472
Target:  5'- uGUCCGCGA-CGCGGuGaCGCGaaaGGCCu -3'
miRNA:   3'- -CGGGCGCUcGCGCC-C-GCGCgg-CUGGc -5'
29383 3' -66.6 NC_006151.1 + 77214 0.66 0.478472
Target:  5'- cCCCGCGccgccGCGUGuGUGCGCCGGgaggcgccccCCGg -3'
miRNA:   3'- cGGGCGCu----CGCGCcCGCGCGGCU----------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.