miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 674 0.68 0.34304
Target:  5'- gGCuCCGCGGauCGCaucGGCGCGCCGAgCCu -3'
miRNA:   3'- -CG-GGCGCUc-GCGc--CCGCGCGGCU-GGc -5'
29383 3' -66.6 NC_006151.1 + 726 0.75 0.123491
Target:  5'- gGUCCGCGGGCGgGGGCuuccgcuccgcgGCGCCcGCCc -3'
miRNA:   3'- -CGGGCGCUCGCgCCCG------------CGCGGcUGGc -5'
29383 3' -66.6 NC_006151.1 + 2102 0.7 0.248345
Target:  5'- gGCCCgaGCGGGcCGCGGG---GCCGGCCGu -3'
miRNA:   3'- -CGGG--CGCUC-GCGCCCgcgCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 2200 0.68 0.364104
Target:  5'- cCCCGCGGGCcgGUGGGUcuccacgGCGCCc-CCGg -3'
miRNA:   3'- cGGGCGCUCG--CGCCCG-------CGCGGcuGGC- -5'
29383 3' -66.6 NC_006151.1 + 2357 0.73 0.176326
Target:  5'- aGCgCCGCG-GCGCagaaGGCGCGCaacuCGGCCGg -3'
miRNA:   3'- -CG-GGCGCuCGCGc---CCGCGCG----GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 2526 0.72 0.197999
Target:  5'- cCCCGagccCGAGCGCGGaGCGCugGCgGGCCa -3'
miRNA:   3'- cGGGC----GCUCGCGCC-CGCG--CGgCUGGc -5'
29383 3' -66.6 NC_006151.1 + 2591 0.66 0.469766
Target:  5'- cGCUgGCGguaGGCGCGcGGCG-GCagcggGACCGg -3'
miRNA:   3'- -CGGgCGC---UCGCGC-CCGCgCGg----CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 2626 0.66 0.469766
Target:  5'- gGUCCGgGgcccGGCGCGGGUGCucaCCGugUa -3'
miRNA:   3'- -CGGGCgC----UCGCGCCCGCGc--GGCugGc -5'
29383 3' -66.6 NC_006151.1 + 3114 0.66 0.435784
Target:  5'- -gCCGCG-GCGCGGGUcccaggccggGCGCgGGgCGc -3'
miRNA:   3'- cgGGCGCuCGCGCCCG----------CGCGgCUgGC- -5'
29383 3' -66.6 NC_006151.1 + 3264 0.73 0.168263
Target:  5'- gGCgCCGCGGcGCGCGGcgauGUGCGCCagggcGGCCGg -3'
miRNA:   3'- -CG-GGCGCU-CGCGCC----CGCGCGG-----CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 3405 0.74 0.139229
Target:  5'- gGgCCGCGGcGUGUGGGUcuCGCCGGCCGg -3'
miRNA:   3'- -CgGGCGCU-CGCGCCCGc-GCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 3450 0.66 0.461141
Target:  5'- -gCCGuCGGGCGCGGG-GUGCuCGGgCa -3'
miRNA:   3'- cgGGC-GCUCGCGCCCgCGCG-GCUgGc -5'
29383 3' -66.6 NC_006151.1 + 3690 0.71 0.237491
Target:  5'- gGCCC-CGGGCGCGcGGCGCuucuucuugcGCCGcUCGg -3'
miRNA:   3'- -CGGGcGCUCGCGC-CCGCG----------CGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 3847 0.68 0.356741
Target:  5'- gGCCCG-GAGCcggggaggccggaGgGGGCGCccGCCGccGCCGg -3'
miRNA:   3'- -CGGGCgCUCG-------------CgCCCGCG--CGGC--UGGC- -5'
29383 3' -66.6 NC_006151.1 + 3952 0.74 0.14259
Target:  5'- gGCuCCGCGGGCcCGGGcCGCGCggCGGCCu -3'
miRNA:   3'- -CG-GGCGCUCGcGCCC-GCGCG--GCUGGc -5'
29383 3' -66.6 NC_006151.1 + 4043 0.74 0.132724
Target:  5'- gGCCuCGCGGGCGCGGGC-C-CCGuCCa -3'
miRNA:   3'- -CGG-GCGCUCGCGCCCGcGcGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 4209 0.73 0.160532
Target:  5'- gGCCCGagggcggccgGGGCGCGGGCGgGCgCGggcaGCCGg -3'
miRNA:   3'- -CGGGCg---------CUCGCGCCCGCgCG-GC----UGGC- -5'
29383 3' -66.6 NC_006151.1 + 4311 0.66 0.4689
Target:  5'- aGCUCGCGGGgcaCGCGGccgggcuGCGCGgCGGCg- -3'
miRNA:   3'- -CGGGCGCUC---GCGCC-------CGCGCgGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 4604 0.67 0.419334
Target:  5'- -gCCGUGGcCGUgGGGCGCGUgGACCc -3'
miRNA:   3'- cgGGCGCUcGCG-CCCGCGCGgCUGGc -5'
29383 3' -66.6 NC_006151.1 + 4792 0.69 0.283369
Target:  5'- cGgCCGCG-GCGCGGuaGCGgGCCGcgGCCu -3'
miRNA:   3'- -CgGGCGCuCGCGCC--CGCgCGGC--UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.