miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 142982 0.66 0.452601
Target:  5'- uCCUGC---CGCGGGUGgGcCCGACCGc -3'
miRNA:   3'- cGGGCGcucGCGCCCGCgC-GGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 142901 0.68 0.329033
Target:  5'- cCUCGCGGGCGCcaccGGCGCGggcaCCGACa- -3'
miRNA:   3'- cGGGCGCUCGCGc---CCGCGC----GGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 142094 0.67 0.379907
Target:  5'- cGCCCGCaggaccuGCGCGGGCugggugaaGCCcACCGc -3'
miRNA:   3'- -CGGGCGcu-----CGCGCCCGcg------CGGcUGGC- -5'
29383 3' -66.6 NC_006151.1 + 141465 0.7 0.271278
Target:  5'- gGUCUG-GAGC-CGGGgGCGCCGAguCCGa -3'
miRNA:   3'- -CGGGCgCUCGcGCCCgCGCGGCU--GGC- -5'
29383 3' -66.6 NC_006151.1 + 141409 0.73 0.176326
Target:  5'- uGUCCgGCGAucgGUGCGGGCGCGgcCCGGCgCGa -3'
miRNA:   3'- -CGGG-CGCU---CGCGCCCGCGC--GGCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 140364 0.74 0.135941
Target:  5'- cGCCCGCgucgucGAGCGCGGcucgagcuGCGUGCUGcCCGa -3'
miRNA:   3'- -CGGGCG------CUCGCGCC--------CGCGCGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 140209 0.66 0.469766
Target:  5'- -aCCGCGGGgGCGGuGCugcagaaccuGCGCCugaagcucgGGCCGu -3'
miRNA:   3'- cgGGCGCUCgCGCC-CG----------CGCGG---------CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 139918 0.7 0.259605
Target:  5'- cGCgCCGCGGGCucgucgccGUGGGC-CGCCGuCCu -3'
miRNA:   3'- -CG-GGCGCUCG--------CGCCCGcGCGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 139821 0.7 0.277271
Target:  5'- cUCCGCGAcgcacGCGCGGGUcgGCG-CGACCc -3'
miRNA:   3'- cGGGCGCU-----CGCGCCCG--CGCgGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 139792 0.66 0.461141
Target:  5'- cGUCUGUcggaGAGCGC--GCGCGCCG-CCGu -3'
miRNA:   3'- -CGGGCG----CUCGCGccCGCGCGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 139643 0.77 0.081548
Target:  5'- cGCCgGCGcgggggucGCgGCGGGCGCGCCGcCCGa -3'
miRNA:   3'- -CGGgCGCu-------CG-CGCCCGCGCGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 139573 0.76 0.106788
Target:  5'- gGUCCGCGAGCGCcuGGGCucGCGCCcccCCGa -3'
miRNA:   3'- -CGGGCGCUCGCG--CCCG--CGCGGcu-GGC- -5'
29383 3' -66.6 NC_006151.1 + 139265 0.71 0.216485
Target:  5'- cGCCCGCGcGCuccgacgGCGGaCGCGCCGcCCu -3'
miRNA:   3'- -CGGGCGCuCG-------CGCCcGCGCGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 139087 0.69 0.295883
Target:  5'- cGCCUGgGGGCGCGcauGGCGCuGUucaCGACCc -3'
miRNA:   3'- -CGGGCgCUCGCGC---CCGCG-CG---GCUGGc -5'
29383 3' -66.6 NC_006151.1 + 138724 0.68 0.335983
Target:  5'- cGCgCGCGGGuCGUGuacGCGCGCCGcgacuGCCGc -3'
miRNA:   3'- -CGgGCGCUC-GCGCc--CGCGCGGC-----UGGC- -5'
29383 3' -66.6 NC_006151.1 + 138615 0.73 0.168263
Target:  5'- cGCUCgGCGAGgacgccgcCGgGGGCGCGCCgGACUGg -3'
miRNA:   3'- -CGGG-CGCUC--------GCgCCCGCGCGG-CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 138327 0.7 0.247792
Target:  5'- uGCCUGCGGGCcCGGcacGCGCgcagcccGCCGGCCc -3'
miRNA:   3'- -CGGGCGCUCGcGCC---CGCG-------CGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 138234 0.66 0.46717
Target:  5'- cGCgCGCacGAGUacGCGGGCGCGaCCGcgcagcggguggugGCCa -3'
miRNA:   3'- -CGgGCG--CUCG--CGCCCGCGC-GGC--------------UGGc -5'
29383 3' -66.6 NC_006151.1 + 137608 0.67 0.419334
Target:  5'- -aUCGgGGGCGCGGGCggggaccccgGCGCCu-CCGc -3'
miRNA:   3'- cgGGCgCUCGCGCCCG----------CGCGGcuGGC- -5'
29383 3' -66.6 NC_006151.1 + 137276 0.68 0.372325
Target:  5'- uGCCCGCGGGCacgcucgagGCGGccauGCGCGgguuCCG-CCGc -3'
miRNA:   3'- -CGGGCGCUCG---------CGCC----CGCGC----GGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.