miRNA display CGI


Results 21 - 40 of 553 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 137118 0.72 0.189064
Target:  5'- cGCCUGgGGGCGCGcgacGGCGCGgCgCGACgCGg -3'
miRNA:   3'- -CGGGCgCUCGCGC----CCGCGC-G-GCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 136983 0.73 0.176326
Target:  5'- cGCCgCGcCGGGCgGCGGGCGCGCgCGcACgGc -3'
miRNA:   3'- -CGG-GC-GCUCG-CGCCCGCGCG-GC-UGgC- -5'
29383 3' -66.6 NC_006151.1 + 136811 0.72 0.180484
Target:  5'- cGCUCGCGGccgacgcgccGCGCGGGCucugcgacgcgGcCGCCGGCCu -3'
miRNA:   3'- -CGGGCGCU----------CGCGCCCG-----------C-GCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 136644 0.72 0.202604
Target:  5'- cGCCCGUgGGGCGCucgccccucgGGGaGCGCgCGGCCGc -3'
miRNA:   3'- -CGGGCG-CUCGCG----------CCCgCGCG-GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 136441 0.81 0.043691
Target:  5'- cGCCgCGCgcuacgucgacGAGCGCGuGCGCGCCGACCGc -3'
miRNA:   3'- -CGG-GCG-----------CUCGCGCcCGCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 136088 0.7 0.271278
Target:  5'- cGCCCGCu-GCGCuccaucgcggucGGGCGCcgcggGCUGACCu -3'
miRNA:   3'- -CGGGCGcuCGCG------------CCCGCG-----CGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 135801 0.66 0.461141
Target:  5'- uGCCgGgCGAGCGCGccgaGGCcgagcuuuuagcGCGCCGccCCGg -3'
miRNA:   3'- -CGGgC-GCUCGCGC----CCG------------CGCGGCu-GGC- -5'
29383 3' -66.6 NC_006151.1 + 135473 0.7 0.259605
Target:  5'- cGCCaGCGuguccGCGCGGGCcaggcgGCGCgCGGCCu -3'
miRNA:   3'- -CGGgCGCu----CGCGCCCG------CGCG-GCUGGc -5'
29383 3' -66.6 NC_006151.1 + 135352 0.73 0.160532
Target:  5'- uGUCCGCGAGcCGCc-GCGCGuuGGCCGc -3'
miRNA:   3'- -CGGGCGCUC-GCGccCGCGCggCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 135289 0.67 0.403265
Target:  5'- cGUCCGUGucCGCGucgacgGCGCCGACCGa -3'
miRNA:   3'- -CGGGCGCucGCGCccg---CGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 135156 0.8 0.056022
Target:  5'- aGCCCgGCGGGCGCGGcccggacGgGCGCCGGCUGc -3'
miRNA:   3'- -CGGG-CGCUCGCGCC-------CgCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 135101 0.67 0.379907
Target:  5'- gGCCgGgCGGGCgGCGGuaGCGCGCgGGgCGg -3'
miRNA:   3'- -CGGgC-GCUCG-CGCC--CGCGCGgCUgGC- -5'
29383 3' -66.6 NC_006151.1 + 134976 0.67 0.411251
Target:  5'- aGCCUcCGGGCcuucucggGCGGGCGCGUCuuGGCgGg -3'
miRNA:   3'- -CGGGcGCUCG--------CGCCCGCGCGG--CUGgC- -5'
29383 3' -66.6 NC_006151.1 + 134792 0.7 0.253923
Target:  5'- gGCCUGUGAGgcCGCGGcggccCGCGCCGGacCCGg -3'
miRNA:   3'- -CGGGCGCUC--GCGCCc----GCGCGGCU--GGC- -5'
29383 3' -66.6 NC_006151.1 + 134412 0.72 0.207301
Target:  5'- uGCCCGCGcgagcuGGUGCugccccccGGGgGCGCCGAgaCCGu -3'
miRNA:   3'- -CGGGCGC------UCGCG--------CCCgCGCGGCU--GGC- -5'
29383 3' -66.6 NC_006151.1 + 134205 0.69 0.308822
Target:  5'- -gUCGCGcAGCGCGGGgGCgGUCGcACCa -3'
miRNA:   3'- cgGGCGC-UCGCGCCCgCG-CGGC-UGGc -5'
29383 3' -66.6 NC_006151.1 + 133738 0.66 0.461141
Target:  5'- gGCgaGCGAGUGggguCGGGCGCguGCgGAUCGa -3'
miRNA:   3'- -CGggCGCUCGC----GCCCGCG--CGgCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 133664 0.68 0.335983
Target:  5'- gGCgCUGCcGGCGCGgcGGCGCGCCc-CCGa -3'
miRNA:   3'- -CG-GGCGcUCGCGC--CCGCGCGGcuGGC- -5'
29383 3' -66.6 NC_006151.1 + 133609 0.66 0.427512
Target:  5'- aGgCCGagGGGCGUcuggGGGuCGCGgCGGCCGg -3'
miRNA:   3'- -CgGGCg-CUCGCG----CCC-GCGCgGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 133472 0.73 0.176326
Target:  5'- gGCCCGCGAGgcggcCGCGGGCGUcaccuuGgCGGCgCGg -3'
miRNA:   3'- -CGGGCGCUC-----GCGCCCGCG------CgGCUG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.