miRNA display CGI


Results 21 - 40 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 4941 0.73 0.168263
Target:  5'- gGCCCGuCGgucGGCGgGGGCcCGUCGGCCa -3'
miRNA:   3'- -CGGGC-GC---UCGCgCCCGcGCGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 5007 0.68 0.350203
Target:  5'- uGCgCGgGGGC-CGGGCGgGCUccggGGCCGg -3'
miRNA:   3'- -CGgGCgCUCGcGCCCGCgCGG----CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 5080 0.73 0.172252
Target:  5'- gGgCCGCGGGgcCGCGGcGgGCGCCGGCgGa -3'
miRNA:   3'- -CgGGCGCUC--GCGCC-CgCGCGGCUGgC- -5'
29383 3' -66.6 NC_006151.1 + 5120 0.73 0.164357
Target:  5'- gGCCCggcGCGGGCGaguGGG-GCGCCgGGCCGg -3'
miRNA:   3'- -CGGG---CGCUCGCg--CCCgCGCGG-CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 5260 0.71 0.237491
Target:  5'- gGCCCgGgGGGCGgaGGGCGaGCgGGCCGg -3'
miRNA:   3'- -CGGG-CgCUCGCg-CCCGCgCGgCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 5369 0.71 0.242867
Target:  5'- cGCCgGCGGGgcugucucUGCGGGgGCGCCccGCCGu -3'
miRNA:   3'- -CGGgCGCUC--------GCGCCCgCGCGGc-UGGC- -5'
29383 3' -66.6 NC_006151.1 + 5546 0.68 0.335983
Target:  5'- cGCCuCGCG-GCgGCGGGCuCGUCGAgCa -3'
miRNA:   3'- -CGG-GCGCuCG-CGCCCGcGCGGCUgGc -5'
29383 3' -66.6 NC_006151.1 + 5602 0.67 0.395379
Target:  5'- -aCCGCGguccccuccGGCGgaGGGgGCGCCGccGCCGc -3'
miRNA:   3'- cgGGCGC---------UCGCg-CCCgCGCGGC--UGGC- -5'
29383 3' -66.6 NC_006151.1 + 5750 0.67 0.379907
Target:  5'- cGCgCCGCcGGCcCGGGCuCaCCGACCGg -3'
miRNA:   3'- -CG-GGCGcUCGcGCCCGcGcGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 5870 0.69 0.322189
Target:  5'- cGCCCG-GGGcCGcCGGGgGCcCCGGCCu -3'
miRNA:   3'- -CGGGCgCUC-GC-GCCCgCGcGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 7158 0.69 0.315452
Target:  5'- uCgCGCGGGCGCGaGGCGCauGCuCGGCaCGc -3'
miRNA:   3'- cGgGCGCUCGCGC-CCGCG--CG-GCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 7652 0.67 0.387592
Target:  5'- cGCCuCGCGcucGGCGCgcgcuccgaGGGCGCcCCaGCCGg -3'
miRNA:   3'- -CGG-GCGC---UCGCG---------CCCGCGcGGcUGGC- -5'
29383 3' -66.6 NC_006151.1 + 7998 0.68 0.335983
Target:  5'- aCCUcggGCGGGCGggaGGGgGCGCgaGACCGg -3'
miRNA:   3'- cGGG---CGCUCGCg--CCCgCGCGg-CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 8324 0.74 0.145679
Target:  5'- cCCCGgGGcGCGCGGGCcucgaucGCGCCcGCCGg -3'
miRNA:   3'- cGGGCgCU-CGCGCCCG-------CGCGGcUGGC- -5'
29383 3' -66.6 NC_006151.1 + 9037 0.83 0.032263
Target:  5'- cGCCCGCcgGGGCGCcccgcgugcuccGGGgGCGCCGGCCGg -3'
miRNA:   3'- -CGGGCG--CUCGCG------------CCCgCGCGGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 10193 0.67 0.403265
Target:  5'- cGCCgguCGCG-GCGCGGGCG-G-CGGCUGc -3'
miRNA:   3'- -CGG---GCGCuCGCGCCCGCgCgGCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 10504 0.67 0.403265
Target:  5'- cGCCCGCcgcCGCaGGCGCGuccCCGGCgCGg -3'
miRNA:   3'- -CGGGCGcucGCGcCCGCGC---GGCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 10625 0.73 0.176326
Target:  5'- cGCCCGCGuGCGCu--CGUGCCGGCgCGg -3'
miRNA:   3'- -CGGGCGCuCGCGcccGCGCGGCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 10655 0.77 0.081347
Target:  5'- cCCCGCccaggcggcggggGAGCGCGGaGCGCGCCGcCCc -3'
miRNA:   3'- cGGGCG-------------CUCGCGCC-CGCGCGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 10926 0.7 0.277271
Target:  5'- gGCCCacggcgcCGAGgGUGGGCGCGCgUGuCCGu -3'
miRNA:   3'- -CGGGc------GCUCgCGCCCGCGCG-GCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.