Results 21 - 40 of 553 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29383 | 3' | -66.6 | NC_006151.1 | + | 140209 | 0.66 | 0.469766 |
Target: 5'- -aCCGCGGGgGCGGuGCugcagaaccuGCGCCugaagcucgGGCCGu -3' miRNA: 3'- cgGGCGCUCgCGCC-CG----------CGCGG---------CUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 113114 | 0.66 | 0.478472 |
Target: 5'- gGgCCGCGGaCGCGGaCGcCGCCGGgcCCGg -3' miRNA: 3'- -CgGGCGCUcGCGCCcGC-GCGGCU--GGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 77214 | 0.66 | 0.478472 |
Target: 5'- cCCCGCGccgccGCGUGuGUGCGCCGGgaggcgccccCCGg -3' miRNA: 3'- cGGGCGCu----CGCGCcCGCGCGGCU----------GGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 63315 | 0.66 | 0.478472 |
Target: 5'- uGUCCGCGA-CGCGGuGaCGCGaaaGGCCu -3' miRNA: 3'- -CGGGCGCUcGCGCC-C-GCGCgg-CUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 48896 | 0.66 | 0.478472 |
Target: 5'- cGCCUGCGcuGGCcgaguaccGCGGcCGCuGCCuGACCGa -3' miRNA: 3'- -CGGGCGC--UCG--------CGCCcGCG-CGG-CUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 48738 | 0.66 | 0.478472 |
Target: 5'- cGCCCGCG-GCGUcGGCGgcaacaacaGCCacgggGGCCGa -3' miRNA: 3'- -CGGGCGCuCGCGcCCGCg--------CGG-----CUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 37146 | 0.66 | 0.478472 |
Target: 5'- cGCCCGC--GC-CGGGC-CGCC-ACCGu -3' miRNA: 3'- -CGGGCGcuCGcGCCCGcGCGGcUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 11639 | 0.66 | 0.478472 |
Target: 5'- aCCCGCacAGCGC--GCaCGCCGACCGc -3' miRNA: 3'- cGGGCGc-UCGCGccCGcGCGGCUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 127801 | 0.66 | 0.478472 |
Target: 5'- -gCCGCGcGCGgGGGCGCGagGuCCu -3' miRNA: 3'- cgGGCGCuCGCgCCCGCGCggCuGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 112801 | 0.66 | 0.478472 |
Target: 5'- uUUCGCGGGCGCGcGucgcugcaGCGCGCCuucGCCa -3' miRNA: 3'- cGGGCGCUCGCGC-C--------CGCGCGGc--UGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 68275 | 0.66 | 0.478472 |
Target: 5'- -gUCGCG-GCGcCGGGCGCcacGgCGGCCa -3' miRNA: 3'- cgGGCGCuCGC-GCCCGCG---CgGCUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 131949 | 0.66 | 0.478472 |
Target: 5'- gGCCacggGCGAGgGCGGGCG-GCaguaCGugUGg -3' miRNA: 3'- -CGGg---CGCUCgCGCCCGCgCG----GCugGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 65367 | 0.66 | 0.475852 |
Target: 5'- cGCCC-CaGGGCGUgcaccacgugccccGGGCGCGCCguGAgCGa -3' miRNA: 3'- -CGGGcG-CUCGCG--------------CCCGCGCGG--CUgGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 34127 | 0.66 | 0.469766 |
Target: 5'- cGCCCccccacCGGGCGgGGuccGCGCuCCGACCc -3' miRNA: 3'- -CGGGc-----GCUCGCgCC---CGCGcGGCUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 130509 | 0.66 | 0.469766 |
Target: 5'- cGCCgCGCGucucgGGCGCGGGCGuCGCguACa- -3' miRNA: 3'- -CGG-GCGC-----UCGCGCCCGC-GCGgcUGgc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 65316 | 0.66 | 0.469766 |
Target: 5'- aGCCCGCGGcCGuUGaGGaacacgaGCGCgCGGCCGa -3' miRNA: 3'- -CGGGCGCUcGC-GC-CCg------CGCG-GCUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 65047 | 0.66 | 0.469766 |
Target: 5'- gGCCCgGCG-GCgGCGGGCGC-CCGuuaauaaaguCCa -3' miRNA: 3'- -CGGG-CGCuCG-CGCCCGCGcGGCu---------GGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 49341 | 0.66 | 0.469766 |
Target: 5'- gGCCUGCGcGC-CGGaccCGCGCCG-CCa -3' miRNA: 3'- -CGGGCGCuCGcGCCc--GCGCGGCuGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 28099 | 0.66 | 0.469766 |
Target: 5'- cGUCCuCGAGCG-GGGCGCggcuccucGUCGGCuCGg -3' miRNA: 3'- -CGGGcGCUCGCgCCCGCG--------CGGCUG-GC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 116762 | 0.66 | 0.469766 |
Target: 5'- aGCCCGCGAGaagagcaGCGuGUGCuCCaGCCGc -3' miRNA: 3'- -CGGGCGCUCg------CGCcCGCGcGGcUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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