Results 21 - 40 of 553 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29383 | 3' | -66.6 | NC_006151.1 | + | 69311 | 0.78 | 0.068566 |
Target: 5'- cGCCgGCGccacacguGCGCGGGCGCGUCG-CCGc -3' miRNA: 3'- -CGGgCGCu-------CGCGCCCGCGCGGCuGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 39335 | 0.77 | 0.089989 |
Target: 5'- uGCUCGCGgcucGGCGCGGcGCgGCGCCGGCUc -3' miRNA: 3'- -CGGGCGC----UCGCGCC-CG-CGCGGCUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 13939 | 0.77 | 0.089989 |
Target: 5'- cCCCggggGCGGGCGCcccgGGGaCGCGCCGGCCa -3' miRNA: 3'- cGGG----CGCUCGCG----CCC-GCGCGGCUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 71216 | 0.77 | 0.089989 |
Target: 5'- uGUCCGUGAcCGUGGGCGCgcgcGCCGACCc -3' miRNA: 3'- -CGGGCGCUcGCGCCCGCG----CGGCUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 34614 | 0.77 | 0.085669 |
Target: 5'- cGCCgagCGCGAgGCGCGGGUGgGgCGACCGc -3' miRNA: 3'- -CGG---GCGCU-CGCGCCCGCgCgGCUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 139643 | 0.77 | 0.081548 |
Target: 5'- cGCCgGCGcgggggucGCgGCGGGCGCGCCGcCCGa -3' miRNA: 3'- -CGGgCGCu-------CG-CGCCCGCGCGGCuGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 69342 | 0.77 | 0.094514 |
Target: 5'- nGCCCGCGAGCGCGGcguagccCGCGuCCaGCCa -3' miRNA: 3'- -CGGGCGCUCGCGCCc------GCGC-GGcUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 75205 | 0.77 | 0.085669 |
Target: 5'- aGCCCGacgaGGGCGUcgGGGCGCGCguCGGCCa -3' miRNA: 3'- -CGGGCg---CUCGCG--CCCGCGCG--GCUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 130929 | 0.77 | 0.087588 |
Target: 5'- gGCCCGCGGGgGCGGGggcggcgggggguCGCGCgGGCgCGg -3' miRNA: 3'- -CGGGCGCUCgCGCCC-------------GCGCGgCUG-GC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 132833 | 0.77 | 0.094283 |
Target: 5'- cGCCCGCGGGaCGgccaccaCGGGCG-GCCGGCCc -3' miRNA: 3'- -CGGGCGCUC-GC-------GCCCGCgCGGCUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 31760 | 0.77 | 0.081548 |
Target: 5'- cGCCUGCG-GCgGCGGGCGCgcGCCGGgCGg -3' miRNA: 3'- -CGGGCGCuCG-CGCCCGCG--CGGCUgGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 10655 | 0.77 | 0.081347 |
Target: 5'- cCCCGCccaggcggcggggGAGCGCGGaGCGCGCCGcCCc -3' miRNA: 3'- cGGGCG-------------CUCGCGCC-CGCGCGGCuGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 68853 | 0.77 | 0.092225 |
Target: 5'- cGCCgCGCGAcGCGUccagcagcgccgGGGCGCGCCcGGCCa -3' miRNA: 3'- -CGG-GCGCU-CGCG------------CCCGCGCGG-CUGGc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 96865 | 0.77 | 0.081548 |
Target: 5'- cGCCCGcCGGGCGCGGcGCGCGCgGGg-- -3' miRNA: 3'- -CGGGC-GCUCGCGCC-CGCGCGgCUggc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 139573 | 0.76 | 0.106788 |
Target: 5'- gGUCCGCGAGCGCcuGGGCucGCGCCcccCCGa -3' miRNA: 3'- -CGGGCGCUCGCG--CCCG--CGCGGcu-GGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 31240 | 0.76 | 0.109417 |
Target: 5'- gGCCCgGCGAGCgaGCGGGCGgGCgaGCCGg -3' miRNA: 3'- -CGGG-CGCUCG--CGCCCGCgCGgcUGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 78336 | 0.76 | 0.104219 |
Target: 5'- cGCCCcgggGCGGGCGCGGGCGaCGaCGACg- -3' miRNA: 3'- -CGGG----CGCUCGCGCCCGC-GCgGCUGgc -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 81763 | 0.76 | 0.109417 |
Target: 5'- gGUCCGCGGGCGCcaccGGGaCGCGCuCGGCgCGc -3' miRNA: 3'- -CGGGCGCUCGCG----CCC-GCGCG-GCUG-GC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 76681 | 0.76 | 0.110485 |
Target: 5'- cGCUgGgGAgcaggggggagagugGCGCGGGCGCGCCGcgGCCGc -3' miRNA: 3'- -CGGgCgCU---------------CGCGCCCGCGCGGC--UGGC- -5' |
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29383 | 3' | -66.6 | NC_006151.1 | + | 99721 | 0.76 | 0.109417 |
Target: 5'- gGCgCCGaCGAGCGCGGcGCuCGUCGACCu -3' miRNA: 3'- -CG-GGC-GCUCGCGCC-CGcGCGGCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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